Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   OK782_RS11305 Genome accession   NZ_CP115904
Coordinates   2134636..2135136 (-) Length   166 a.a.
NCBI ID   WP_017147169.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain MS11 HL-1-22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2129636..2140136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK782_RS11285 (OK782_11285) msrAB 2130082..2131650 (-) 1569 WP_003696288.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  OK782_RS11290 (OK782_11290) pilA 2131796..2133049 (+) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene
  OK782_RS11295 (OK782_11295) - 2133085..2133303 (-) 219 WP_157778910.1 hypothetical protein -
  OK782_RS11300 (OK782_11300) - 2133317..2134072 (-) 756 Protein_2165 opacity family porin -
  OK782_RS11305 (OK782_11305) pilE 2134636..2135136 (-) 501 WP_017147169.1 pilin Machinery gene
  OK782_RS11310 (OK782_11310) - 2135505..2135648 (-) 144 WP_003691943.1 hypothetical protein -
  OK782_RS11320 (OK782_11320) - 2135907..2136290 (-) 384 Protein_2168 pilin -
  OK782_RS11325 (OK782_11325) pilE 2136408..2136839 (-) 432 WP_003696281.1 pilin Machinery gene
  OK782_RS11330 (OK782_11330) lpxC 2136945..2137868 (-) 924 WP_003696279.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  OK782_RS11335 (OK782_11335) pilE 2138399..2138818 (-) 420 WP_017147167.1 pilin Machinery gene
  OK782_RS11340 (OK782_11340) - 2138914..2139333 (-) 420 Protein_2172 pilin -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17939.45 Da        Isoelectric Point: 7.8401

>NTDB_id=774306 OK782_RS11305 WP_017147169.1 2134636..2135136(-) (pilE) [Neisseria gonorrhoeae strain MS11 HL-1-22]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPENNTSAGVASPPTDI
KGKYVKEVEVKNGVVTATMLSSGVNNEIKGKKLSLWGRRENGSVKWFCGQPVTRADDDTVADAKDGKEIDTKHLPSTCRD
KASDAK

Nucleotide


Download         Length: 501 bp        

>NTDB_id=774306 OK782_RS11305 WP_017147169.1 2134636..2135136(-) (pilE) [Neisseria gonorrhoeae strain MS11 HL-1-22]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCTATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TCACCGAGTATTACCTGAATCACGGCAAATGGCCGGAAAACAACACTTCTGCCGGCGTGGCATCCCCCCCCACCGACATC
AAAGGCAAATATGTTAAAGAGGTTGAAGTTAAAAACGGCGTCGTTACCGCCACAATGCTTTCAAGCGGCGTAAACAATGA
AATCAAAGGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGC
GCGCCGACGACGACACCGTTGCCGACGCCAAAGACGGCAAAGAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGAT
AAGGCATCTGATGCCAAATGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-159)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

100

100

1
  pilE Neisseria gonorrhoeae strain FA1090

81.212

99.398

0.807
  comP Acinetobacter baylyi ADP1

39.286

100

0.398
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

34.031

100

0.392
  pilA/pilA1 Eikenella corrodens VA1

35.465

100

0.367
  pilA2 Legionella pneumophila strain ERS1305867

38.217

94.578

0.361