Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   OK782_RS11325 Genome accession   NZ_CP115904
Coordinates   2136408..2136839 (-) Length   143 a.a.
NCBI ID   WP_003696281.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain MS11 HL-1-22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2131408..2141839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK782_RS11290 (OK782_11290) pilA 2131796..2133049 (+) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene
  OK782_RS11295 (OK782_11295) - 2133085..2133303 (-) 219 WP_157778910.1 hypothetical protein -
  OK782_RS11300 (OK782_11300) - 2133317..2134072 (-) 756 Protein_2165 opacity family porin -
  OK782_RS11305 (OK782_11305) pilE 2134636..2135136 (-) 501 WP_017147169.1 pilin Machinery gene
  OK782_RS11310 (OK782_11310) - 2135505..2135648 (-) 144 WP_003691943.1 hypothetical protein -
  OK782_RS11320 (OK782_11320) - 2135907..2136290 (-) 384 Protein_2168 pilin -
  OK782_RS11325 (OK782_11325) pilE 2136408..2136839 (-) 432 WP_003696281.1 pilin Machinery gene
  OK782_RS11330 (OK782_11330) lpxC 2136945..2137868 (-) 924 WP_003696279.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  OK782_RS11335 (OK782_11335) pilE 2138399..2138818 (-) 420 WP_017147167.1 pilin Machinery gene
  OK782_RS11340 (OK782_11340) - 2138914..2139333 (-) 420 Protein_2172 pilin -
  OK782_RS11345 (OK782_11345) - 2139790..2140734 (-) 945 WP_003689774.1 IS110-like element ISNgo3 family transposase -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15279.02 Da        Isoelectric Point: 5.9416

>NTDB_id=774307 OK782_RS11325 WP_003696281.1 2136408..2136839(-) (pilE) [Neisseria gonorrhoeae strain MS11 HL-1-22]
MPTDPDSRLRGNDEAILLAEGQKSAVAGYYLNNGEWPEDNGAAGVASASKIIGKYVKEVKVENGVVTAQMASSNVNKEIQ
GKKLSLWGRREDGSVKWFCGQPVKRDDTAAKAGTDDVAKDDAAGKKIDTKHLPSTCRDEPTAT

Nucleotide


Download         Length: 432 bp        

>NTDB_id=774307 OK782_RS11325 WP_003696281.1 2136408..2136839(-) (pilE) [Neisseria gonorrhoeae strain MS11 HL-1-22]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGCCAAAAATCAGCCGTTGC
CGGGTATTACCTGAATAACGGCGAATGGCCGGAAGACAACGGCGCTGCCGGCGTGGCATCCGCTTCAAAAATCATAGGCA
AATATGTTAAGGAAGTTAAAGTCGAAAACGGCGTCGTCACCGCCCAAATGGCTTCAAGCAACGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACGA
CACCGCCGCCAAAGCCGGCACCGACGACGTCGCCAAAGACGACGCCGCCGGCAAAAAAATCGACACCAAGCACCTGCCGT
CAACCTGCCGCGATGAACCAACTGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

64.583

100

0.65
  pilE Neisseria gonorrhoeae MS11

65.957

98.601

0.65