Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   OK782_RS11335 Genome accession   NZ_CP115904
Coordinates   2138399..2138818 (-) Length   139 a.a.
NCBI ID   WP_017147167.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain MS11 HL-1-22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2139790..2140734 2138399..2138818 flank 972


Gene organization within MGE regions


Location: 2138399..2140734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK782_RS11335 (OK782_11335) pilE 2138399..2138818 (-) 420 WP_017147167.1 pilin Machinery gene
  OK782_RS11340 (OK782_11340) - 2138914..2139333 (-) 420 Protein_2172 pilin -
  OK782_RS11345 (OK782_11345) - 2139790..2140734 (-) 945 WP_003689774.1 IS110-like element ISNgo3 family transposase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 14883.43 Da        Isoelectric Point: 5.7587

>NTDB_id=774308 OK782_RS11335 WP_017147167.1 2138399..2138818(-) (pilE) [Neisseria gonorrhoeae strain MS11 HL-1-22]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGEWPEDNTSAGVASSPTDIKGKYVQSVTVANGVVTAEMASTGVNKEI
QGKRLSLWAKRENGSVKWFCGQPVTRAAKDDDAVTADGNNKIDTKHLPSTCRDTSSAGK

Nucleotide


Download         Length: 420 bp        

>NTDB_id=774308 OK782_RS11335 WP_017147167.1 2138399..2138818(-) (pilE) [Neisseria gonorrhoeae strain MS11 HL-1-22]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTCAC
CGAGTATTACCTGAATCACGGCGAATGGCCGGAAGACAACACTTCTGCCGGCGTGGCATCCTCCCCCACCGACATCAAAG
GCAAATATGTTCAAAGCGTTACGGTCGCAAACGGCGTCGTTACCGCCGAAATGGCTTCAACCGGCGTAAACAAAGAAATC
CAAGGCAAAAGACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGC
CGCCAAAGACGACGACGCCGTCACCGCCGACGGCAACAACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGACA
CTTCATCTGCCGGTAAGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

76.087

99.281

0.755
  pilE Neisseria gonorrhoeae MS11

71.631

100

0.727