Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PAK23_RS08875 Genome accession   NZ_CP115817
Coordinates   1908837..1909160 (+) Length   107 a.a.
NCBI ID   WP_264145358.1    Uniprot ID   -
Organism   Pseudomonas mendocina strain GD22SC3150TT     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1903837..1914160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAK23_RS08855 - 1904041..1904637 (+) 597 WP_276489098.1 sugar transferase -
  PAK23_RS08860 - 1904634..1905269 (+) 636 WP_276489099.1 acetyltransferase -
  PAK23_RS08865 - 1905385..1906566 (+) 1182 WP_276489100.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein -
  PAK23_RS08870 - 1906751..1908748 (+) 1998 WP_276489101.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  PAK23_RS08875 comEA/comE1 1908837..1909160 (+) 324 WP_264145358.1 helix-hairpin-helix domain-containing protein Machinery gene
  PAK23_RS08885 - 1910029..1911225 (-) 1197 WP_276489102.1 amino acid aminotransferase -
  PAK23_RS08890 uvrB 1911471..1913486 (+) 2016 WP_276489103.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11252.83 Da        Isoelectric Point: 5.1316

>NTDB_id=773811 PAK23_RS08875 WP_264145358.1 1908837..1909160(+) (comEA/comE1) [Pseudomonas mendocina strain GD22SC3150TT]
MLKIRLSSILFAVLASFSLAAAAAENPKTESTKAAAVQVAQVAAVNLNTADAETLQRELVGIGATKAQAIVAYREEHGNF
ASVDELLEVKGIGEATLEKNRDKLSVN

Nucleotide


Download         Length: 324 bp        

>NTDB_id=773811 PAK23_RS08875 WP_264145358.1 1908837..1909160(+) (comEA/comE1) [Pseudomonas mendocina strain GD22SC3150TT]
ATGCTGAAAATCCGTCTGTCTTCCATTCTGTTTGCTGTTCTTGCTTCCTTCTCTCTGGCTGCTGCTGCAGCTGAAAACCC
AAAAACCGAAAGTACCAAAGCGGCTGCAGTGCAGGTCGCGCAGGTTGCCGCGGTCAATCTGAATACTGCCGATGCTGAAA
CGCTACAGCGTGAGCTGGTGGGGATTGGTGCGACCAAGGCGCAGGCGATTGTGGCTTACCGTGAGGAGCACGGTAATTTC
GCCTCGGTGGACGAGTTGTTGGAAGTTAAGGGTATTGGCGAGGCGACGCTGGAGAAGAATCGCGACAAGTTGAGTGTGAA
CTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(44-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

50.943

99.065

0.505
  comE1/comEA Haemophilus influenzae Rd KW20

44.545

100

0.458
  comEA Legionella pneumophila str. Paris

46.154

97.196

0.449
  comEA Legionella pneumophila strain ERS1305867

46.154

97.196

0.449
  comEA Vibrio parahaemolyticus RIMD 2210633

43.299

90.654

0.393
  comEA Vibrio cholerae C6706

54.93

66.355

0.364
  comEA Vibrio cholerae strain A1552

54.93

66.355

0.364
  comEA Acinetobacter baylyi ADP1

44.318

82.243

0.364
  comEA Vibrio campbellii strain DS40M4

40.206

90.654

0.364