NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	QR290_RS19385	Genome accession	NZ_CP128260
Coordinates	4345419..4346054 (-)	Length	211 a.a.
NCBI ID	WP_007951559.1	Uniprot ID	A0ABX7GBN9
Organism	Pseudomonas fluorescens strain PH.SM
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4340419..4351054

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QR290_RS19370 (QR290_19370)	-	4341041..4341313 (-)	273	WP_002552737.1	HU family DNA-binding protein	-
QR290_RS19375 (QR290_19375)	lon	4341462..4343858 (-)	2397	WP_007951557.1	endopeptidase La	-
QR290_RS19380 (QR290_19380)	clpX	4344022..4345305 (-)	1284	WP_007951558.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
QR290_RS19385 (QR290_19385)	clpP	4345419..4346054 (-)	636	WP_007951559.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
QR290_RS19390 (QR290_19390)	tig	4346147..4347457 (-)	1311	WP_045121656.1	trigger factor	-
QR290_RS19415 (QR290_19415)	folD	4348612..4349466 (+)	855	WP_085608325.1	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	-
QR290_RS19420 (QR290_19420)	pbpG	4349696..4350634 (+)	939	WP_011335039.1	D-alanyl-D-alanine endopeptidase	-
QR290_RS19425 (QR290_19425)	-	4350687..4350893 (-)	207	WP_115078536.1	hypothetical protein	-

Sequence

Protein

Download Length: 211 a.a. Molecular weight: 23449.84 Da Isoelectric Point: 5.3139

                                >NTDB_id=773440 QR290_RS19385 WP_007951559.1 4345419..4346054(-) (clpP) [Pseudomonas fluorescens strain PH.SM]

MFRNSYIQQNSDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYI

NSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAPGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEIL

FIRERLNTLMAKHSGRTLEEIERDTNRDNFMSAEAAKEYGLIDEVINQRPA

Nucleotide

Download Length: 636 bp

                                >NTDB_id=773440 QR290_RS19385 WP_007951559.1 4345419..4346054(-) (clpP) [Pseudomonas fluorescens strain PH.SM]

ATGTTCCGTAATTCCTATATTCAGCAGAACTCTGATATCCAGGCCGCCGGCGGCCTGGTCCCGATGGTTGTCGAGCAATC

TGCTCGTGGCGAGCGCGCCTATGACATCTACTCGCGTCTTCTCAAGGAGCGAGTGATCTTTCTGGTAGGTCCTGTAGAGG

ACTACATGGCCAACCTGATTTGCGCGCAATTGCTGTTCCTTGAAGCGGAAAACCCGGACAAGGACATCCATCTTTATATC

AACTCCCCGGGCGGTTCGGTGACAGCGGGCATGTCGATCTACGACACCATGCAGTTCATCAAGCCAAACGTATCGACTAC

CTGTATCGGTCAGGCGTGCAGCATGGGCGCGTTCCTGCTGACGGCCGGTGCACCTGGCAAGCGTTTCTGCCTGCCTAACT

CGCGCGTGATGATTCACCAGCCACTGGGCGGTTTCCAGGGCCAGGCATCGGACATCGAAATCCATGCCAAGGAAATCCTC

TTCATCCGCGAGCGTCTGAACACGCTGATGGCCAAGCACAGCGGTCGTACGCTTGAAGAAATCGAACGCGACACCAACCG

CGACAACTTCATGAGTGCAGAAGCTGCGAAGGAATACGGTCTGATCGACGAAGTGATCAACCAGCGCCCAGCTTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(29-208)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.368	90.047	0.607
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.737	90.047	0.583
clpP	Lactococcus lactis subsp. cremoris KW2	56.771	90.995	0.517
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	55.208	90.995	0.502
clpP	Streptococcus pneumoniae Rx1	53.158	90.047	0.479
clpP	Streptococcus pneumoniae D39	53.158	90.047	0.479
clpP	Streptococcus pneumoniae R6	53.158	90.047	0.479
clpP	Streptococcus pneumoniae TIGR4	53.158	90.047	0.479
clpP	Streptococcus mutans UA159	53.158	90.047	0.479
clpP	Streptococcus pyogenes JRS4	52.632	90.047	0.474
clpP	Streptococcus pyogenes MGAS315	52.632	90.047	0.474
clpP	Streptococcus thermophilus LMG 18311	52.632	90.047	0.474
clpP	Streptococcus thermophilus LMD-9	52.632	90.047	0.474

Detailed information NTG0773440