Detailed information NTG0773439

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: QR290_RS19380
• Genome accession: NZ_CP128260
• Coordinates: 4344022..4345305 (-)
• Length: 427 a.a.
• NCBI ID: WP_007951558.1
• Uniprot ID: A0ACD2U437
• Organism: Pseudomonas fluorescens strain PH.SM
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 4339022..4350305

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QR290_RS19370 (QR290_19370)	-	4341041..4341313 (-)	273	WP_002552737.1	HU family DNA-binding protein	-
QR290_RS19375 (QR290_19375)	lon	4341462..4343858 (-)	2397	WP_007951557.1	endopeptidase La	-
QR290_RS19380 (QR290_19380)	clpX	4344022..4345305 (-)	1284	WP_007951558.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
QR290_RS19385 (QR290_19385)	clpP	4345419..4346054 (-)	636	WP_007951559.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
QR290_RS19390 (QR290_19390)	tig	4346147..4347457 (-)	1311	WP_045121656.1	trigger factor	-
QR290_RS19415 (QR290_19415)	folD	4348612..4349466 (+)	855	WP_085608325.1	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	-

Sequence

Protein

• Length: 427 a.a.
• Molecular weight: 46912.53 Da
• Isoelectric Point: 4.8431

>NTDB_id=773439 QR290_RS19380 WP_007951558.1 4344022..4345305(-) (clpX) [Pseudomonas fluorescens strain PH.SM]
MTDTRNGEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEVQEAQAESSAHKLPSPKEISGILDQYVI
GQERAKKVLAVAVYNHYKRLNQRDKKADDVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTRNILFICGGAFSGLEKVIQNRSTKGGIGFNAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPVLATLDELDE
AALMQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVAKRALERKTGARGLRSILEGVLLDTMYEIPSQSEVSKVVID
ESVIEGKSKPLYIYENSEPAAKAAPDA

Nucleotide

• Length: 1284 bp

>NTDB_id=773439 QR290_RS19380 WP_007951558.1 4344022..4345305(-) (clpX) [Pseudomonas fluorescens strain PH.SM]
ATGACTGACACCCGCAACGGCGAGGACAACGGCAAGCTGCTCTATTGCTCCTTCTGTGGCAAAAGCCAGCATGAAGTGCG
CAAATTGATTGCCGGCCCCTCGGTCTTTATCTGCGACGAGTGCGTCGACCTGTGCAATGACATCATCCGCGAGGAGGTGC
AGGAAGCACAGGCCGAAAGCAGCGCGCATAAATTGCCTTCGCCTAAAGAAATCAGCGGCATCCTTGATCAGTATGTAATT
GGTCAGGAACGTGCCAAAAAGGTTCTGGCGGTAGCGGTGTACAACCACTACAAGCGTCTGAACCAGCGTGACAAAAAGGC
TGACGACGTCGAACTCGGCAAGAGCAACATCCTGCTGATCGGCCCGACCGGCTCCGGTAAAACCCTGCTGGCCGAAACCC
TGGCCCGCTTGCTGAACGTTCCGTTCACCATCGCCGACGCAACCACCCTCACCGAGGCGGGTTACGTAGGTGAAGACGTC
GAGAACATCATTCAGAAGCTGCTGCAGAAGTGCGATTACGACGTAGAGAAAGCCCAGATGGGTATTGTCTACATCGACGA
AATCGACAAGATTTCGCGCAAGTCCGACAACCCGTCGATCACCCGGGACGTTTCCGGTGAAGGCGTGCAGCAGGCCTTGC
TCAAACTGATCGAAGGCACGGTCGCTTCCGTTCCGCCGCAAGGTGGCCGCAAGCATCCGCAGCAGGAATTCCTTCAGGTT
GATACCCGTAACATCCTGTTCATCTGCGGTGGCGCGTTCTCCGGTCTGGAGAAGGTCATTCAGAACCGTTCCACCAAGGG
CGGCATCGGTTTCAACGCAGAAGTGCGCAGCAAGGAAGAAGGAAAGAAAGTCGGTGAATCCCTGCGTGAAGTCGAGCCTG
ACGATCTGGTCAAGTTCGGTCTGATCCCGGAATTCGTCGGTCGTCTGCCGGTCCTGGCGACGCTGGACGAGCTGGATGAG
GCTGCTTTGATGCAGATTCTCACCGAGCCGAAGAATGCCCTGACCAAACAGTATGCCAAGCTGTTCGAGATGGAAGGCGT
GGATCTGGAATTCCGTTCCGACGCGCTGAAATCGGTCGCCAAGCGTGCTCTGGAACGTAAAACCGGTGCCCGTGGCCTGC
GTTCGATTCTCGAAGGTGTGCTGCTCGACACGATGTATGAAATCCCCTCGCAATCCGAGGTGAGCAAAGTCGTGATCGAT
GAAAGCGTGATCGAAGGCAAGTCCAAGCCACTGTATATCTACGAAAACAGTGAGCCGGCTGCCAAGGCTGCACCGGACGC
GTAA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-396)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	60.837	95.082	0.578
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.436	94.614	0.534