Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QRO24_RS00210 Genome accession   NZ_CP127829
Coordinates   46384..46971 (-) Length   195 a.a.
NCBI ID   WP_013745609.1    Uniprot ID   A0A0A2YPL6
Organism   Gallibacterium anatis strain OH/Ck/12965/20     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 41384..51971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRO24_RS00190 (QRO24_00190) fruB 41767..42927 (-) 1161 WP_409025859.1 fused PTS fructose transporter subunit IIA/HPr protein -
  QRO24_RS00195 (QRO24_00195) - 43153..44454 (-) 1302 WP_039096419.1 anaerobic C4-dicarboxylate transporter -
  QRO24_RS00200 (QRO24_00200) - 44585..44983 (-) 399 WP_335798088.1 YbaN family protein -
  QRO24_RS00205 (QRO24_00205) clpX 45125..46372 (-) 1248 WP_013745610.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  QRO24_RS00210 (QRO24_00210) clpP 46384..46971 (-) 588 WP_013745609.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  QRO24_RS00215 (QRO24_00215) tig 47112..48413 (-) 1302 WP_018345830.1 trigger factor -
  QRO24_RS00220 (QRO24_00220) - 48585..49151 (-) 567 WP_013745607.1 cytochrome b -
  QRO24_RS00225 (QRO24_00225) - 49262..50077 (+) 816 WP_039087707.1 NAD-dependent dehydratase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21658.95 Da        Isoelectric Point: 5.2660

>NTDB_id=772830 QRO24_RS00210 WP_013745609.1 46384..46971(-) (clpP) [Gallibacterium anatis strain OH/Ck/12965/20]
MALVPMVVEQTARGERAFDIYSRLLKERVIFLNGQVEDNMANLIVAQLLFLEAENPDEDINLYINSPGGVVTAGMAIYDT
MQFIKPDVRTLCMGQACSMGAFLLAGGAAGKRFALPHARIMIHQPLGGYRGQASDIQIHAQEILKIKDTLNQRLAFHTGQ
PLEVVERDTDRDNFMSAQAAKEYGLIDEVLTHRQL

Nucleotide


Download         Length: 588 bp        

>NTDB_id=772830 QRO24_RS00210 WP_013745609.1 46384..46971(-) (clpP) [Gallibacterium anatis strain OH/Ck/12965/20]
ATGGCATTAGTCCCAATGGTTGTCGAACAAACTGCTCGTGGTGAACGTGCTTTCGATATTTATTCTCGCTTACTGAAAGA
ACGTGTAATTTTTCTGAACGGTCAAGTAGAGGATAATATGGCTAACTTAATTGTTGCTCAATTATTATTCCTTGAAGCGG
AAAACCCGGATGAAGATATTAATCTTTATATCAATTCTCCCGGCGGCGTTGTCACTGCCGGTATGGCAATTTACGATACA
ATGCAATTTATCAAACCTGATGTGCGTACTCTTTGTATGGGGCAGGCTTGTTCTATGGGCGCATTTTTATTGGCAGGCGG
TGCAGCCGGAAAACGTTTTGCACTTCCACACGCTCGCATAATGATTCACCAACCTTTAGGCGGATATCGTGGTCAAGCTT
CGGATATTCAGATTCACGCACAGGAAATCCTTAAAATCAAAGATACTTTAAATCAACGTCTTGCTTTTCATACAGGCCAA
CCATTGGAAGTTGTCGAACGCGATACTGATCGTGATAACTTTATGTCTGCCCAAGCCGCTAAAGAATATGGTTTAATTGA
TGAAGTATTAACTCATCGCCAACTATAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A2YPL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.01

99.487

0.667
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.957

96.41

0.636
  clpP Streptococcus thermophilus LMG 18311

55.897

100

0.559
  clpP Streptococcus thermophilus LMD-9

55.897

100

0.559
  clpP Streptococcus pneumoniae R6

54.872

100

0.549
  clpP Streptococcus pneumoniae Rx1

54.872

100

0.549
  clpP Streptococcus pneumoniae D39

54.872

100

0.549
  clpP Streptococcus pneumoniae TIGR4

54.872

100

0.549
  clpP Lactococcus lactis subsp. cremoris KW2

52.821

100

0.528
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.308

100

0.523
  clpP Streptococcus mutans UA159

51.531

100

0.518
  clpP Streptococcus pyogenes JRS4

50.769

100

0.508
  clpP Streptococcus pyogenes MGAS315

50.769

100

0.508