Detailed information NTG0772829

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: QRO24_RS00205
• Genome accession: NZ_CP127829
• Coordinates: 45125..46372 (-)
• Length: 415 a.a.
• NCBI ID: WP_013745610.1
• Uniprot ID: A0AB36DXJ3
• Organism: Gallibacterium anatis strain OH/Ck/12965/20
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 40125..51372

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QRO24_RS00185 (QRO24_00185)	fruK	40827..41765 (-)	939	WP_039142571.1	1-phosphofructokinase	-
QRO24_RS00190 (QRO24_00190)	fruB	41767..42927 (-)	1161	WP_409025859.1	fused PTS fructose transporter subunit IIA/HPr protein	-
QRO24_RS00195 (QRO24_00195)	-	43153..44454 (-)	1302	WP_039096419.1	anaerobic C4-dicarboxylate transporter	-
QRO24_RS00200 (QRO24_00200)	-	44585..44983 (-)	399	WP_335798088.1	YbaN family protein	-
QRO24_RS00205 (QRO24_00205)	clpX	45125..46372 (-)	1248	WP_013745610.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
QRO24_RS00210 (QRO24_00210)	clpP	46384..46971 (-)	588	WP_013745609.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
QRO24_RS00215 (QRO24_00215)	tig	47112..48413 (-)	1302	WP_018345830.1	trigger factor	-
QRO24_RS00220 (QRO24_00220)	-	48585..49151 (-)	567	WP_013745607.1	cytochrome b	-
QRO24_RS00225 (QRO24_00225)	-	49262..50077 (+)	816	WP_039087707.1	NAD-dependent dehydratase	-

Sequence

Protein

• Length: 415 a.a.
• Molecular weight: 46156.76 Da
• Isoelectric Point: 4.9442

>NTDB_id=772829 QRO24_RS00205 WP_013745610.1 45125..46372(-) (clpX) [Gallibacterium anatis strain OH/Ck/12965/20]
MSDKPENNEKFYCSLCGKEKHEVGKLIAGVSGYICNECVETCHDLLMEEANKHQKEQEQEKPLEKLPTPHQIRAHLDDYV
IGQDQAKKILSVAVYNHYKRLRNNETDLDVELGKSNILLIGPTGSGKTLLAQTLARQINVPFAIADATTLTEAGYVGEDV
ENIIQRLLQNCDYDTEKAEQGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLKV
DTSKILFICGGAFSGLDKIIEKRTHKDRGIGFNANVQSKEKEHDIGELFAQVETEDLIKFGLIPEFVGRLPVVASLAELD
EEALIRILTVPKNALIKQYQALFTLENVELEFTPEALTAIAKKALARKTGARGLRSIVEGVLLDTMYDLPSLEGLKKVVV
DQDVIDNQALPKLEY

Nucleotide

• Length: 1248 bp

>NTDB_id=772829 QRO24_RS00205 WP_013745610.1 45125..46372(-) (clpX) [Gallibacterium anatis strain OH/Ck/12965/20]
ATGTCAGATAAACCAGAAAACAACGAAAAATTTTACTGCTCACTTTGTGGCAAAGAAAAACACGAAGTCGGCAAATTAAT
CGCCGGTGTATCCGGTTATATTTGCAATGAATGTGTGGAAACTTGCCACGATTTATTAATGGAAGAAGCCAATAAACATC
AAAAAGAGCAAGAACAGGAAAAACCGCTTGAAAAATTGCCTACTCCTCACCAAATTCGCGCACATTTGGATGATTATGTC
ATTGGACAAGATCAAGCGAAAAAAATCCTTTCCGTTGCTGTTTATAACCATTACAAACGTTTACGCAACAATGAAACCGA
TCTTGATGTTGAATTAGGCAAAAGTAACATTTTGCTTATCGGTCCGACCGGAAGCGGGAAAACATTATTGGCACAAACAT
TAGCTCGCCAAATTAATGTGCCTTTCGCCATTGCCGATGCAACTACGTTGACTGAAGCCGGTTATGTCGGTGAAGATGTG
GAAAATATTATCCAGCGGCTATTGCAAAATTGTGATTACGATACGGAAAAAGCGGAACAGGGTATTATTTATATTGATGA
AATCGATAAAATTACTCGTAAATCTGAAAATCCTTCCATTACCCGCGATGTTTCCGGTGAAGGTGTGCAACAAGCGTTAT
TAAAACTGATTGAAGGCACTATTGCCTCCGTTCCGCCTCAAGGCGGACGCAAACACCCACAGCAAGAGTTTTTGAAAGTG
GATACCTCAAAAATTCTGTTTATTTGTGGCGGTGCATTCTCTGGTTTGGATAAAATCATTGAAAAACGCACCCACAAAGA
TCGTGGAATCGGTTTTAATGCCAATGTACAAAGCAAAGAGAAAGAGCACGATATCGGTGAATTGTTCGCGCAAGTCGAAA
CTGAAGATTTAATTAAATTCGGTTTAATTCCTGAATTTGTCGGTCGTTTGCCGGTTGTAGCCTCATTGGCTGAATTGGAC
GAAGAAGCATTAATTCGCATTTTAACTGTGCCGAAAAATGCCTTAATCAAACAATATCAAGCGCTATTTACATTGGAAAA
TGTGGAGTTGGAATTCACTCCGGAAGCATTAACCGCCATTGCTAAAAAAGCACTGGCACGTAAAACCGGCGCTAGAGGAT
TACGTTCCATCGTCGAAGGCGTGCTGCTCGATACAATGTACGATCTTCCTTCTTTAGAGGGATTAAAGAAAGTCGTTGTA
GATCAGGATGTTATCGATAATCAAGCCCTTCCGAAATTAGAATACTAA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-47)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (319-393)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-312)

3D structure

• AlphaFold DB: A0AB36DXJ3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	57.212	100	0.573
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.025	95.904	0.528