Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GVV68_RS22940 Genome accession   NZ_CP115307
Coordinates   3701226..3702464 (-) Length   412 a.a.
NCBI ID   WP_000990688.1    Uniprot ID   A0A9W5QDY8
Organism   Bacillus cereus strain BC-01     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3696226..3707464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVV68_RS22920 (GVV68_22925) rny 3697018..3698580 (-) 1563 WP_000204911.1 ribonuclease Y -
  GVV68_RS22925 (GVV68_22930) - 3699061..3699483 (-) 423 Protein_3668 DNA recombination/repair protein RecA -
  GVV68_RS22930 (GVV68_22935) - 3699752..3700375 (-) 624 WP_000301532.1 hypothetical protein -
  GVV68_RS22935 (GVV68_22940) recA 3700473..3701081 (-) 609 Protein_3670 recombinase RecA -
  GVV68_RS22940 (GVV68_22945) cinA 3701226..3702464 (-) 1239 WP_000990688.1 competence/damage-inducible protein CinA Machinery gene
  GVV68_RS22945 (GVV68_22950) pgsA 3702485..3703063 (-) 579 WP_001052967.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GVV68_RS22950 (GVV68_22955) - 3703128..3704039 (-) 912 WP_000137491.1 helix-turn-helix domain-containing protein -
  GVV68_RS22955 (GVV68_22960) - 3704061..3704846 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  GVV68_RS22960 (GVV68_22965) - 3704985..3705233 (-) 249 WP_000114450.1 DUF3243 domain-containing protein -
  GVV68_RS22965 (GVV68_22970) ymfI 3705309..3706022 (-) 714 WP_000759606.1 elongation factor P 5-aminopentanone reductase -
  GVV68_RS22970 (GVV68_22975) yfmH 3706123..3707409 (-) 1287 WP_000411969.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45479.80 Da        Isoelectric Point: 5.3499

>NTDB_id=771785 GVV68_RS22940 WP_000990688.1 3701226..3702464(-) (cinA) [Bacillus cereus strain BC-01]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IAASLDEELVYDEKALALISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDVLKADIGISFTGVAGPDASEQKEPGTVFVGLSIKDEPTVVFPLNLSGSRQQIRERTAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=771785 GVV68_RS22940 WP_000990688.1 3701226..3702464(-) (cinA) [Bacillus cereus strain BC-01]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGATTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATACTTATTTTTACAGGTGGATTAGGACCAACAAAAGATGATTTAACGAAAGAAACG
ATAGCTGCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAGCCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCTGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGTTTCTTCGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTGCAAGATTTAATTGATGGACAAACAAACCCAACAATCGCCCCGTTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAACTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAACGCTGGTG
TTTCTTCTGTGTTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTG
TTGCATACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATGTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAACCAGGAACAGTATTTGTTGGGCTTTCGA
TTAAGGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGCGGAAGTCGTCAACAAATTAGAGAACGAACAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.252

100

0.583
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus mitis SK321

46.539

100

0.473
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.98

96.602

0.444
  cinA Streptococcus suis isolate S10

40.318

91.505

0.369