Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QPK52_RS18225 Genome accession   NZ_CP127170
Coordinates   4048426..4049112 (+) Length   228 a.a.
NCBI ID   WP_410538545.1    Uniprot ID   -
Organism   Streptomyces sp. KL2     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4043426..4054112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK52_RS18195 - 4043716..4044954 (-) 1239 WP_410538543.1 acyltransferase family protein -
  QPK52_RS18200 - 4045457..4045651 (+) 195 WP_093654442.1 hypothetical protein -
  QPK52_RS18215 tig 4046116..4047504 (+) 1389 WP_410538544.1 trigger factor -
  QPK52_RS18220 clpP 4047759..4048361 (+) 603 WP_177213868.1 ATP-dependent Clp protease proteolytic subunit Regulator
  QPK52_RS18225 clpP 4048426..4049112 (+) 687 WP_410538545.1 ATP-dependent Clp protease proteolytic subunit Regulator
  QPK52_RS18230 clpX 4049293..4050588 (+) 1296 WP_093654456.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  QPK52_RS18235 - 4050677..4051630 (-) 954 WP_410538546.1 hypothetical protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25096.39 Da        Isoelectric Point: 4.7332

>NTDB_id=771326 QPK52_RS18225 WP_410538545.1 4048426..4049112(+) (clpP) [Streptomyces sp. KL2]
MNSQHSFPGAGIHDRLEARYAGPSAESRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLES
MDPDRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARILIHQPYSETGRGQ
VSDLEIAANEVQRMRTQLEEMLAKHSNKAIEQISQDIERDKILTAEESLEYGLIDQIISTRKTSVGLG

Nucleotide


Download         Length: 687 bp        

>NTDB_id=771326 QPK52_RS18225 WP_410538545.1 4048426..4049112(+) (clpP) [Streptomyces sp. KL2]
ATGAACAGTCAGCACAGCTTCCCCGGGGCCGGGATCCACGACCGCCTCGAGGCCCGCTACGCCGGGCCGTCGGCCGAGTC
CCGCTACGTCGTTCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGGGAGTACGACCCGTACGCGAAGCTCTTCGAGG
AGCGCGTGATCTTCCTCGGTGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCG
ATGGACCCCGACCGCGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACGGCGCTGACGGCCATCTACGACAC
GATGCAGTTCGTCAAGCCGGACATCCAGACCGTCTGCATGGGCCAGGCCGCCTCCGCCGCGGCCGTGCTGCTCGCCGCCG
GCACCCCCGGCAAGCGGATGGCGCTGCCCAACGCGCGGATCCTGATCCACCAGCCGTACAGCGAGACCGGCCGCGGCCAG
GTCTCCGACCTGGAGATCGCCGCCAACGAGGTGCAGCGGATGCGCACCCAGCTGGAGGAGATGCTCGCCAAGCACTCCAA
CAAGGCGATCGAGCAGATCAGCCAGGACATCGAGCGCGACAAGATCCTCACCGCCGAGGAGTCGCTGGAGTACGGCCTGA
TCGACCAGATCATCTCCACCCGCAAGACCTCGGTGGGGCTGGGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(40-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

83.333

0.417
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.936

82.456

0.404
  clpP Streptococcus mutans UA159

46.392

85.088

0.395
  clpP Lactococcus lactis subsp. cremoris KW2

47.12

83.772

0.395
  clpP Streptococcus pyogenes JRS4

46.842

83.333

0.39
  clpP Streptococcus pyogenes MGAS315

46.842

83.333

0.39
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

46.073

83.772

0.386
  clpP Streptococcus thermophilus LMD-9

44.845

85.088

0.382
  clpP Streptococcus thermophilus LMG 18311

44.845

85.088

0.382
  clpP Streptococcus pneumoniae Rx1

44.56

84.649

0.377
  clpP Streptococcus pneumoniae D39

44.56

84.649

0.377
  clpP Streptococcus pneumoniae R6

44.56

84.649

0.377
  clpP Streptococcus pneumoniae TIGR4

44.56

84.649

0.377