Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP80_RS01905 Genome accession   NZ_CP115280
Coordinates   395780..396337 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain F010     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 390780..401337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP80_RS01885 (PCP80_01890) pilR 392056..393393 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  PCP80_RS01890 (PCP80_01895) thiO 393439..394533 (-) 1095 WP_009316267.1 glycine oxidase ThiO -
  PCP80_RS01895 (PCP80_01900) - 394668..395177 (+) 510 WP_015503652.1 GspH/FimT family pseudopilin -
  PCP80_RS01900 (PCP80_01905) - 395283..395789 (+) 507 WP_003094696.1 GspH/FimT family pseudopilin -
  PCP80_RS01905 (PCP80_01910) pilV 395780..396337 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  PCP80_RS01910 (PCP80_01915) pilW 396334..397158 (+) 825 WP_023101584.1 type 4a pilus minor pilin PilW -
  PCP80_RS01915 (PCP80_01920) pilX 397155..397742 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  PCP80_RS01920 (PCP80_01925) pilY1 397754..401245 (+) 3492 WP_021264113.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=771197 PCP80_RS01905 WP_003094697.1 395780..396337(+) (pilV) [Pseudomonas aeruginosa strain F010]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=771197 PCP80_RS01905 WP_003094697.1 395780..396337(+) (pilV) [Pseudomonas aeruginosa strain F010]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978