Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   QQX51_RS26445 Genome accession   NZ_CP127120
Coordinates   5705804..5706328 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain USA_2_BIM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5700804..5711328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQX51_RS26430 (QQX51_26410) aroB 5701932..5703038 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  QQX51_RS26435 (QQX51_26415) aroK 5703088..5703606 (-) 519 WP_003095833.1 shikimate kinase AroK -
  QQX51_RS26440 (QQX51_26420) pilQ 5703618..5705750 (-) 2133 WP_003116137.1 type 4a pilus secretin PilQ Machinery gene
  QQX51_RS26445 (QQX51_26425) comL/pilP 5705804..5706328 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  QQX51_RS26450 (QQX51_26430) pilO 5706325..5706948 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  QQX51_RS26455 (QQX51_26435) pilN 5706945..5707541 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  QQX51_RS26460 (QQX51_26440) pilM 5707541..5708605 (-) 1065 WP_023103573.1 type IV pilus assembly protein PilM Machinery gene
  QQX51_RS26465 (QQX51_26445) - 5708790..5711261 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=770611 QQX51_RS26445 WP_003116136.1 5705804..5706328(-) (comL/pilP) [Pseudomonas aeruginosa strain USA_2_BIM]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=770611 QQX51_RS26445 WP_003116136.1 5705804..5706328(-) (comL/pilP) [Pseudomonas aeruginosa strain USA_2_BIM]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAT
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCGGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGATGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362