NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	QP019_RS00200	Genome accession	NZ_CP126978
Coordinates	44963..45550 (-)	Length	195 a.a.
NCBI ID	WP_013745609.1	Uniprot ID	A0A0A2YPL6
Organism	Gallibacterium anatis strain YJ922
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 39963..50550

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QP019_RS00180 (QP019_00180)	fruB	40355..41512 (-)	1158	Protein_34	fused PTS fructose transporter subunit IIA/HPr protein	-
QP019_RS00185 (QP019_00185)	-	41732..43033 (-)	1302	WP_264780064.1	anaerobic C4-dicarboxylate transporter	-
QP019_RS00190 (QP019_00190)	-	43164..43562 (-)	399	WP_018345828.1	YbaN family protein	-
QP019_RS00195 (QP019_00195)	clpX	43704..44951 (-)	1248	WP_013745610.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
QP019_RS00200 (QP019_00200)	clpP	44963..45550 (-)	588	WP_013745609.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
QP019_RS00205 (QP019_00205)	tig	45691..46992 (-)	1302	WP_018345830.1	trigger factor	-
QP019_RS00210 (QP019_00210)	-	47164..47730 (-)	567	WP_013745607.1	cytochrome b	-
QP019_RS00215 (QP019_00215)	-	47842..48657 (+)	816	WP_039087707.1	NAD-dependent dehydratase	-

Sequence

Protein

Download Length: 195 a.a. Molecular weight: 21658.95 Da Isoelectric Point: 5.2660

                                >NTDB_id=769709 QP019_RS00200 WP_013745609.1 44963..45550(-) (clpP) [Gallibacterium anatis strain YJ922]

MALVPMVVEQTARGERAFDIYSRLLKERVIFLNGQVEDNMANLIVAQLLFLEAENPDEDINLYINSPGGVVTAGMAIYDT

MQFIKPDVRTLCMGQACSMGAFLLAGGAAGKRFALPHARIMIHQPLGGYRGQASDIQIHAQEILKIKDTLNQRLAFHTGQ

PLEVVERDTDRDNFMSAQAAKEYGLIDEVLTHRQL

Nucleotide

Download Length: 588 bp

                                >NTDB_id=769709 QP019_RS00200 WP_013745609.1 44963..45550(-) (clpP) [Gallibacterium anatis strain YJ922]

ATGGCATTAGTCCCAATGGTTGTCGAACAAACTGCTCGTGGTGAACGTGCTTTCGATATTTATTCTCGCTTACTGAAAGA

ACGTGTTATTTTTCTTAATGGGCAAGTTGAAGACAATATGGCCAACTTAATCGTTGCTCAATTGCTATTCCTTGAAGCGG

AAAACCCGGATGAAGATATTAATCTTTATATCAATTCTCCCGGCGGCGTTGTCACTGCCGGTATGGCAATTTACGATACA

ATGCAATTTATCAAACCTGATGTGCGTACTCTTTGTATGGGGCAGGCTTGTTCTATGGGCGCATTTTTATTGGCAGGCGG

TGCAGCCGGAAAACGTTTTGCACTTCCACATGCTCGCATAATGATTCACCAACCTTTAGGCGGATATCGTGGTCAAGCTT

CGGATATTCAGATTCACGCACAGGAAATCCTTAAAATCAAAGATACTTTAAATCAACGTCTTGCTTTTCATACAGGCCAA

CCATTGGAAGTTGTCGAACGCGATACTGATCGTGATAACTTTATGTCTGCCCAAGCCGCTAAAGAATATGGTTTAATTGA

TGAAGTATTAACTCATCGCCAACTATAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0A2YPL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.01	99.487	0.667
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	65.957	96.41	0.636
clpP	Streptococcus thermophilus LMG 18311	55.897	100	0.559
clpP	Streptococcus thermophilus LMD-9	55.897	100	0.559
clpP	Streptococcus pneumoniae R6	54.872	100	0.549
clpP	Streptococcus pneumoniae Rx1	54.872	100	0.549
clpP	Streptococcus pneumoniae D39	54.872	100	0.549
clpP	Streptococcus pneumoniae TIGR4	54.872	100	0.549
clpP	Lactococcus lactis subsp. cremoris KW2	52.821	100	0.528
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	52.308	100	0.523
clpP	Streptococcus mutans UA159	51.531	100	0.518
clpP	Streptococcus pyogenes JRS4	50.769	100	0.508
clpP	Streptococcus pyogenes MGAS315	50.769	100	0.508

Detailed information NTG0769709