Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   O8413_RS08970 Genome accession   NZ_CP115188
Coordinates   1949103..1950329 (+) Length   408 a.a.
NCBI ID   WP_283512449.1    Uniprot ID   -
Organism   Vibrio furnissii strain MT14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1944103..1955329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O8413_RS08945 (O8413_08945) fldB 1944486..1945007 (+) 522 WP_004729075.1 flavodoxin FldB -
  O8413_RS08950 (O8413_08950) ampD 1945043..1945597 (-) 555 WP_158140199.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  O8413_RS08955 (O8413_08955) nadC 1945746..1946633 (+) 888 WP_154180385.1 carboxylating nicotinate-nucleotide diphosphorylase -
  O8413_RS08960 (O8413_08960) - 1946880..1947329 (+) 450 WP_055466517.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  O8413_RS08965 (O8413_08965) pilB 1947336..1949024 (+) 1689 WP_283512448.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O8413_RS08970 (O8413_08970) pilC 1949103..1950329 (+) 1227 WP_283512449.1 type II secretion system F family protein Machinery gene
  O8413_RS08975 (O8413_08975) pilD 1950381..1951250 (+) 870 WP_004729087.1 A24 family peptidase Machinery gene
  O8413_RS08980 (O8413_08980) coaE 1951253..1951861 (+) 609 WP_283512450.1 dephospho-CoA kinase -
  O8413_RS08985 (O8413_08985) zapD 1951894..1952634 (+) 741 WP_283512451.1 cell division protein ZapD -
  O8413_RS08990 (O8413_08990) yacG 1952692..1952889 (+) 198 WP_004729092.1 DNA gyrase inhibitor YacG -
  O8413_RS08995 (O8413_08995) parC 1952982..1955255 (-) 2274 WP_004729093.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44845.12 Da        Isoelectric Point: 10.5674

>NTDB_id=768804 O8413_RS08970 WP_283512449.1 1949103..1950329(+) (pilC) [Vibrio furnissii strain MT14]
MKPNKAAELKNFRWKGINSSGRKVAGHTLAISEIEVRDKLKEQHIQVKKIKKGSISLLTRLTHRVKTRDITLLTRQLSTM
LTTGVPIVQALKLVGDNHRKAEMKSILAQVTKGVEAGTPMSKAMRTASPHFDALYVDLIATGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPAMVMLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSLWGVLATSAGLLA
LKTARNKSLFFRLKTSRLGLRFPVIGAVLAKAAIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAIQEVHRHTAA
GMPMYIAMRNTDAFPEMVLQMVMIGEESGKLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=768804 O8413_RS08970 WP_283512449.1 1949103..1950329(+) (pilC) [Vibrio furnissii strain MT14]
ATGAAACCAAATAAAGCTGCCGAATTGAAAAACTTCCGCTGGAAAGGCATCAACAGCTCCGGGCGAAAAGTTGCCGGACA
CACCTTGGCCATCAGTGAAATTGAGGTGCGCGACAAGCTCAAAGAGCAGCACATTCAGGTGAAGAAGATCAAAAAGGGCA
GCATTTCACTGCTGACTCGCCTCACCCACCGTGTCAAGACTCGCGACATCACCCTGCTCACACGCCAGCTTTCCACCATG
CTGACTACAGGTGTACCCATCGTTCAAGCGTTGAAACTGGTTGGCGACAATCATCGCAAAGCAGAAATGAAATCGATTCT
GGCCCAAGTCACCAAAGGGGTAGAAGCAGGCACCCCGATGTCCAAAGCGATGCGCACTGCCAGCCCACATTTTGATGCGC
TATACGTTGACCTTATTGCCACCGGCGAGCAATCCGGGAATTTGGCCGAAGTGTTTGAGCGCCTTGCCACCTATCGAGAA
AAAAGCGAACAACTGCGCGCCAAAGTGATCAAGGCGCTGATCTATCCGGCGATGGTGATGTTGGTGGCGTTGGGCGTCTC
TTATCTGATGCTGACCATGGTCATTCCCGAGTTTGAAAGCATGTTCAAAGGCTTTGGCGCAGAGCTCCCTTGGTTTACAC
AGCAAATTCTTAAACTCTCCCACGGCGTGCAAGCCTATAGCCTATGGGGTGTACTGGCGACCAGCGCTGGCCTATTGGCG
CTCAAAACCGCGCGCAATAAATCATTGTTCTTTCGATTGAAAACCAGCCGCCTTGGCTTGCGCTTTCCTGTTATCGGCGC
GGTCTTAGCCAAGGCTGCCATTGCCAAATTCAGCCGCACATTGGCCACCAGTTTTAGCGCCGGTATACCAATTCTGGCCA
GTTTAAAAACCACCGCCAAAACCGCCGGCAACGTCCATTTTGAAACCGCGATTCAGGAGGTACATCGCCATACCGCGGCA
GGCATGCCGATGTACATCGCCATGCGCAATACCGACGCATTTCCGGAGATGGTGCTGCAAATGGTGATGATTGGCGAAGA
GTCGGGCAAGCTTGACGACATGCTGAACAAAGTCGCGACCATTTATGAGTTTGAAGTCGACAATACCGTGGACAATCTGG
GTAAAATTCTCGAGCCGCTGATCATCGTCTTTCTGGGAGTGGTCGTTGGCGGGCTGGTGGTTGCGATGTACCTCCCCATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

84.804

100

0.848
  pilC Vibrio campbellii strain DS40M4

73.697

98.775

0.728
  pilC Pseudomonas stutzeri DSM 10701

42.469

99.265

0.422
  pilC Acinetobacter baumannii D1279779

41.422

100

0.414
  pilC Legionella pneumophila strain ERS1305867

42.105

97.794

0.412
  pilC Acinetobacter baylyi ADP1

40.196

100

0.402
  pilG Neisseria gonorrhoeae MS11

38.916

99.51

0.387
  pilG Neisseria meningitidis 44/76-A

38.67

99.51

0.385