Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PCQ86_RS04870 Genome accession   NZ_CP115182
Coordinates   995772..996989 (-) Length   405 a.a.
NCBI ID   WP_012655750.1    Uniprot ID   A0AAX1WYX1
Organism   Diaphorobacter sp. ED-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 990772..1001989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCQ86_RS04840 - 991792..992670 (+) 879 WP_011804247.1 ATP-binding protein -
  PCQ86_RS04845 - 992667..993113 (+) 447 WP_012655746.1 NUDIX domain-containing protein -
  PCQ86_RS04850 - 993183..993413 (-) 231 WP_270174994.1 DNA gyrase inhibitor YacG -
  PCQ86_RS04855 zapD 993420..994175 (-) 756 WP_172206340.1 cell division protein ZapD -
  PCQ86_RS04860 coaE 994266..994889 (-) 624 WP_172206343.1 dephospho-CoA kinase -
  PCQ86_RS04865 - 994891..995772 (-) 882 WP_270174995.1 A24 family peptidase -
  PCQ86_RS04870 pilC 995772..996989 (-) 1218 WP_012655750.1 type II secretion system F family protein Machinery gene
  PCQ86_RS04875 pilB 997010..998743 (-) 1734 WP_012655751.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PCQ86_RS04885 - 999081..1000064 (-) 984 WP_270174996.1 polyprenyl synthetase family protein -
  PCQ86_RS04890 rplU 1000234..1000545 (+) 312 WP_012655753.1 50S ribosomal protein L21 -
  PCQ86_RS04895 rpmA 1000563..1000820 (+) 258 WP_270174997.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44423.44 Da        Isoelectric Point: 9.5091

>NTDB_id=768678 PCQ86_RS04870 WP_012655750.1 995772..996989(-) (pilC) [Diaphorobacter sp. ED-3]
MATVASRGIKDFVFEWEGKDRSGKIVRGEVRAAGENQVKATLRRQGVLPTKIKKRRMSAGKKIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTKLLNDIRGDVETGTSLNAAFRKYPMYFDSLYCNLVEAGEAAGILEALLDRLALYMEKT
EAIKSKIRSALMYPISVIIVAFVVVTIIMIFVIPAFKEVFTSFGADLPAPTLFVMAISEFFVAYWWLIFGVIGGGFYFFM
QAWKRSEKMQRFMDRFLLKMPIFGALIDKSCVARWTRTLSTMFAAGVPLVEALDSVAGASGNSVYAIATEKIQQEVSTGT
SLTAAMGNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=768678 PCQ86_RS04870 WP_012655750.1 995772..996989(-) (pilC) [Diaphorobacter sp. ED-3]
ATGGCGACCGTTGCATCGAGGGGCATCAAGGACTTTGTCTTCGAGTGGGAGGGCAAGGATCGTAGCGGCAAGATCGTGCG
CGGCGAAGTACGCGCTGCGGGAGAGAACCAGGTCAAGGCGACGCTGCGGCGGCAGGGCGTTCTGCCGACCAAGATCAAGA
AGCGCCGGATGAGCGCGGGCAAGAAGATCAAGCCCAAAGACATCGCGCTGTTCACGCGCCAGATGGCCACGATGATGAAG
GCCGGCGTTCCGCTGCTTCAGGCATTTGATATCGTGGGCCGGGGTAATACCAATCCCAGTGTGACCAAGCTGCTCAACGA
TATCCGCGGAGATGTGGAGACAGGAACGTCCCTGAATGCCGCATTCCGTAAATATCCGATGTATTTCGACAGCCTTTACT
GCAACCTCGTAGAGGCCGGCGAAGCCGCCGGTATCCTGGAAGCGTTGCTCGACCGGCTGGCCCTGTACATGGAGAAGACC
GAGGCCATCAAATCCAAGATCCGGTCGGCGCTGATGTACCCGATCTCGGTGATCATCGTTGCGTTTGTCGTGGTGACGAT
CATCATGATTTTCGTGATTCCCGCGTTCAAAGAGGTTTTCACCTCGTTCGGAGCCGACCTGCCCGCTCCTACCCTGTTCG
TGATGGCCATCAGCGAATTCTTCGTGGCTTACTGGTGGCTGATATTCGGCGTCATCGGCGGGGGGTTCTACTTCTTCATG
CAGGCTTGGAAGCGCAGCGAGAAAATGCAGCGTTTCATGGACCGTTTCCTGCTGAAAATGCCCATCTTCGGTGCATTGAT
CGACAAGTCCTGCGTTGCCCGTTGGACCCGCACCCTGTCGACCATGTTCGCTGCCGGTGTGCCATTGGTGGAGGCACTGG
ACTCGGTGGCTGGTGCATCGGGCAACTCGGTCTACGCCATCGCGACGGAGAAGATTCAGCAGGAAGTCTCCACAGGTACC
AGCCTGACGGCCGCCATGGGGAATGCCAACGTATTCCCCTCCATGGTGCTGCAGATGTGCGCGATCGGCGAGGAATCAGG
CTCCATCGACCACATGCTGGGCAAGGCCGCCGACTTCTATGAAGCCGAAGTGGATGAAATGGTGGCCGGCCTGTCCAGCC
TGATGGAGCCCATCATCATCGTGTTCCTGGGCACGCTGATCGGTGGCATCGTGGTGTCGATGTACCTTCCGATCTTCAAG
CTCGGGCAAGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.309

100

0.553
  pilG Neisseria gonorrhoeae MS11

53.535

97.778

0.523
  pilG Neisseria meningitidis 44/76-A

53.283

97.778

0.521
  pilC Acinetobacter baylyi ADP1

50.754

98.272

0.499
  pilC Legionella pneumophila strain ERS1305867

49.749

98.272

0.489
  pilC Acinetobacter baumannii D1279779

49.874

98.025

0.489
  pilC Vibrio cholerae strain A1552

40.404

97.778

0.395
  pilC Vibrio campbellii strain DS40M4

39.9

99.012

0.395
  pilC Thermus thermophilus HB27

37.845

98.519

0.373