Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QPX65_RS04395 Genome accession   NZ_CP126698
Coordinates   933708..934334 (+) Length   208 a.a.
NCBI ID   WP_011078149.1    Uniprot ID   -
Organism   Vibrio vulnificus strain VV2018     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 928708..939334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX65_RS04385 (QPX65_04385) - 929965..931752 (-) 1788 WP_130191194.1 ATP-binding protein -
  QPX65_RS04390 (QPX65_04390) tig 932304..933602 (+) 1299 WP_011078150.1 trigger factor -
  QPX65_RS04395 (QPX65_04395) clpP 933708..934334 (+) 627 WP_011078149.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  QPX65_RS04400 (QPX65_04400) clpX 934405..935685 (+) 1281 WP_011078148.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  QPX65_RS04405 (QPX65_04405) lon 935804..938155 (+) 2352 WP_011078147.1 endopeptidase La -
  QPX65_RS04410 (QPX65_04410) - 938349..938621 (+) 273 WP_013572181.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22952.31 Da        Isoelectric Point: 5.0212

>NTDB_id=768405 QPX65_RS04395 WP_011078149.1 933708..934334(+) (clpP) [Vibrio vulnificus strain VV2018]
MSYQEKNAMSPIIDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSP
GGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIK
TKLNKLLAEHTGQPLEVIERDTDRDNFMSADQAVEYGLVDAVLTHRSA

Nucleotide


Download         Length: 627 bp        

>NTDB_id=768405 QPX65_RS04395 WP_011078149.1 933708..934334(+) (clpP) [Vibrio vulnificus strain VV2018]
ATGAGCTACCAAGAAAAAAATGCAATGTCGCCAATCATCGATGCACTAGTACCAATGGTGGTTGAACAAACTTCCCGTGG
TGAACGTTCTTACGATATTTATTCGCGTTTGCTAAAAGAGCGAGTGATTTTCCTCACCGGACAGGTTGAAGACCACATGG
CAAACCTTGTCGTGGCTCAGCTACTTTTCCTAGAGTCTGAGAACCCAGACAAAGATATCTTCCTTTACATTAACTCTCCA
GGTGGCAGCGTGACGGCAGGTATGTCGATTTACGACACAATGCAGTTCATCAAGCCAAATGTGAGCACAGTATGTATGGG
TCAAGCATGTTCAATGGGGGCATTTTTGCTTGCTGGTGGTGCACCAGGTAAGCGTTATGTACTACCTAACTCACGTGTGA
TGATTCACCAGCCACTTGGTGGTTTCCAAGGTCAAGCGTCAGACATCCAAATTCATGCTCAGGAAATTCTTACTATTAAG
ACTAAACTGAACAAGTTGTTGGCAGAACACACTGGCCAGCCATTGGAAGTGATTGAACGTGATACTGATCGCGATAATTT
TATGTCGGCAGATCAGGCAGTAGAATACGGTTTGGTGGACGCAGTATTGACTCATCGCAGTGCATAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(26-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

70.526

91.346

0.644
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.894

90.385

0.587
  clpP Streptococcus pneumoniae R6

54.124

93.269

0.505
  clpP Streptococcus pneumoniae TIGR4

54.124

93.269

0.505
  clpP Streptococcus pneumoniae D39

54.124

93.269

0.505
  clpP Streptococcus pneumoniae Rx1

54.124

93.269

0.505
  clpP Lactococcus lactis subsp. cremoris KW2

52.062

93.269

0.486
  clpP Streptococcus thermophilus LMG 18311

52.604

92.308

0.486
  clpP Streptococcus thermophilus LMD-9

52.604

92.308

0.486
  clpP Streptococcus mutans UA159

51.813

92.788

0.481
  clpP Streptococcus pyogenes JRS4

52.105

91.346

0.476
  clpP Streptococcus pyogenes MGAS315

52.105

91.346

0.476
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.515

93.269

0.471