Detailed information NTG0768406

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: QPX65_RS04400
• Genome accession: NZ_CP126698
• Coordinates: 934405..935685 (+)
• Length: 426 a.a.
• NCBI ID: WP_011078148.1
• Uniprot ID: Q7MMG6
• Organism: Vibrio vulnificus strain VV2018
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 929405..940685

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QPX65_RS04385 (QPX65_04385)	-	929965..931752 (-)	1788	WP_130191194.1	ATP-binding protein	-
QPX65_RS04390 (QPX65_04390)	tig	932304..933602 (+)	1299	WP_011078150.1	trigger factor	-
QPX65_RS04395 (QPX65_04395)	clpP	933708..934334 (+)	627	WP_011078149.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
QPX65_RS04400 (QPX65_04400)	clpX	934405..935685 (+)	1281	WP_011078148.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
QPX65_RS04405 (QPX65_04405)	lon	935804..938155 (+)	2352	WP_011078147.1	endopeptidase La	-
QPX65_RS04410 (QPX65_04410)	-	938349..938621 (+)	273	WP_013572181.1	HU family DNA-binding protein	-
QPX65_RS04415 (QPX65_04415)	ppiD	938798..940657 (+)	1860	WP_130350167.1	peptidylprolyl isomerase	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 46542.04 Da
• Isoelectric Point: 4.5889

>NTDB_id=768406 QPX65_RS04400 WP_011078148.1 934405..935685(+) (clpX) [Vibrio vulnificus strain VV2018]
MTDKSKESGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKDVLPKRESEALPTPREIRAHLDDYVI
GQDHAKKVLAVAVYNHYKRLRNGDTTSDGVELGKSNILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVAKAERGIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLVEGTIASVPPQGGRKHPQQEFLQV
DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKDESKTVGELFTQVEPEDLVKYGLIPEFIGRLPVTASLTELD
EEALIQILCQPKNALTKQYAALFELEGADLEFREDALKAIAKKAMERKTGARGLRSILEGVLLETMYELPSMDDVSKVVI
DESVINGESEPLLIYTNSDSQAAGAE

Nucleotide

• Length: 1281 bp

>NTDB_id=768406 QPX65_RS04400 WP_011078148.1 934405..935685(+) (clpX) [Vibrio vulnificus strain VV2018]
ATGACAGACAAAAGCAAAGAGAGTGGTAGTGGTAAGTTGCTTTACTGCTCTTTCTGCGGCAAAAGCCAGCACGAAGTTCG
CAAGCTAATCGCTGGTCCATCCGTTTACATCTGTGACGAATGTGTCGATTTATGTAACGACATCATCCGTGAAGAGATCA
AAGATGTGCTTCCAAAACGCGAATCTGAAGCGTTGCCAACGCCTCGTGAGATCCGTGCACACCTTGATGACTATGTAATC
GGTCAAGACCATGCGAAAAAAGTGCTCGCGGTTGCGGTATATAACCACTACAAGCGTTTACGTAATGGTGACACAACGAG
TGATGGCGTGGAGCTAGGTAAGAGTAACATCTTGCTGATCGGCCCAACAGGTAGCGGTAAGACGTTGCTTGCTGAGACGC
TTGCGCGTTTCCTCGATGTACCGTTCACTATGGCAGATGCCACGACGCTAACAGAAGCGGGTTATGTGGGCGAAGATGTT
GAAAACATCATTCAAAAGTTGCTTCAGAAATGTGATTACGACGTAGCGAAAGCAGAGCGTGGTATTGTGTATATCGATGA
AATTGACAAGATTTCTCGTAAAGCAGAAAACCCATCTATTACTCGTGACGTTTCTGGTGAAGGCGTTCAGCAAGCGTTGC
TTAAACTGGTTGAAGGTACGATTGCTTCTGTACCACCTCAAGGTGGTCGTAAGCATCCTCAGCAAGAGTTTTTGCAAGTG
GATACGTCAAAGATTCTCTTTATCTGTGGTGGTGCATTTGCCGGTCTAGATAAAGTGATTGAACAACGCGTTGCAACAGG
TACCGGCATTGGTTTTGGTGCGGAAGTCCGCTCTAAAGACGAAAGCAAAACAGTGGGCGAATTGTTCACTCAGGTAGAGC
CAGAAGATCTTGTGAAATATGGTTTGATTCCTGAGTTTATTGGTCGTCTACCAGTGACCGCTTCGTTGACCGAGTTAGAC
GAAGAAGCATTAATTCAGATTCTTTGCCAACCAAAAAATGCGCTAACAAAGCAATATGCAGCGCTGTTTGAACTGGAAGG
TGCGGATCTTGAGTTCAGAGAAGATGCGCTAAAAGCGATCGCGAAAAAAGCGATGGAGCGTAAAACAGGCGCTCGTGGCT
TGCGTTCAATTTTGGAAGGCGTGTTGCTAGAAACCATGTATGAACTGCCATCGATGGACGACGTGAGCAAAGTTGTCATT
GATGAATCGGTGATTAATGGTGAATCAGAGCCGCTTTTGATTTACACCAACAGTGATAGCCAAGCCGCTGGCGCTGAGTA
A

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (114-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (319-396)

3D structure

• AlphaFold DB: Q7MMG6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	59.102	94.131	0.556
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.062	95.07	0.523