Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   O9T45_RS03890 Genome accession   NZ_CP115042
Coordinates   749498..750742 (+) Length   414 a.a.
NCBI ID   WP_014929597.1    Uniprot ID   -
Organism   Listeria monocytogenes strain MKELm6_2022     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 744498..755742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O9T45_RS03870 (O9T45_03870) yfmH 745672..746958 (+) 1287 WP_003727460.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  O9T45_RS03875 (O9T45_03875) ymfI 747050..747781 (+) 732 WP_003727459.1 elongation factor P 5-aminopentanone reductase -
  O9T45_RS03880 (O9T45_03880) - 747832..748761 (+) 930 WP_003727458.1 helix-turn-helix domain-containing protein -
  O9T45_RS03885 (O9T45_03885) pgsA 748852..749430 (+) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  O9T45_RS03890 (O9T45_03890) cinA 749498..750742 (+) 1245 WP_014929597.1 competence/damage-inducible protein A Machinery gene
  O9T45_RS03895 (O9T45_03895) recA 751015..752061 (+) 1047 WP_003725961.1 recombinase RecA Machinery gene
  O9T45_RS03900 (O9T45_03900) rny 752362..753924 (+) 1563 WP_003721904.1 ribonuclease Y -
  O9T45_RS03905 (O9T45_03905) - 754039..754536 (+) 498 WP_009918755.1 GNAT family N-acetyltransferase -
  O9T45_RS03910 (O9T45_03910) - 754542..755345 (+) 804 WP_003721906.1 TIGR00282 family metallophosphoesterase -
  O9T45_RS03915 (O9T45_03915) - 755362..755724 (+) 363 WP_014929949.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45693.82 Da        Isoelectric Point: 4.6123

>NTDB_id=768072 O9T45_RS03890 WP_014929597.1 749498..750742(+) (cinA) [Listeria monocytogenes strain MKELm6_2022]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPTRLKEVIEIAENRSDILIFTGGLGPTEDDITKQ
ILAAHLQKQLVEDEYHMNKINEYFTSRNRTMTENNKLQAVIIEDSIVLNNDFGFAAGMYLRENNHTYVLLPGPPSEMKPM
FTSYANPLLLSESGDQNILESKIMRFFGIGESQLAADLNDLIVTQVNPTIATYAGDNEVVVRITATAKTKEEASRLVKET
EEEILRREGTFLYGYGEVSLSELVTAMLLENELTISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGYETEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDAN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=768072 O9T45_RS03890 WP_014929597.1 749498..750742(+) (cinA) [Listeria monocytogenes strain MKELm6_2022]
ATGGCAAGTGCAGAAATCATTGCAGTAGGAACAGAACTATTACTAGGGCAAATTGTTAATTCTAATGCTGCGTTTATTTC
ACAAGAATTAGCTGCTGACGGAATATATGTATATCATCATACGGTAGTTGGAGATAACCCAACACGTTTAAAAGAAGTAA
TCGAAATCGCTGAAAACCGAAGTGACATTTTAATCTTTACCGGCGGACTTGGACCGACTGAGGATGATATTACAAAACAA
ATCTTGGCTGCTCATCTACAAAAGCAATTAGTGGAAGATGAATACCATATGAATAAAATTAATGAGTATTTCACTTCTAG
GAATAGGACTATGACCGAAAATAATAAATTACAAGCGGTTATTATTGAAGATTCCATCGTATTAAATAATGATTTTGGCT
TTGCGGCTGGAATGTACTTAAGAGAAAACAATCATACTTACGTTTTGCTACCAGGTCCACCATCTGAAATGAAACCAATG
TTTACAAGCTATGCTAACCCATTACTTTTAAGCGAAAGTGGCGATCAAAACATTTTAGAATCCAAAATTATGCGCTTTTT
TGGAATTGGAGAGTCACAATTAGCTGCTGATTTAAATGATTTGATTGTCACGCAAGTCAACCCGACGATTGCGACATATG
CTGGTGATAATGAAGTTGTGGTCCGTATCACAGCGACAGCTAAAACAAAAGAAGAAGCAAGCAGACTTGTGAAGGAAACC
GAGGAAGAAATATTGCGCCGAGAAGGTACCTTTTTATATGGATATGGAGAGGTGTCATTGTCTGAATTAGTTACGGCGAT
GTTACTTGAAAACGAACTTACCATCTCTGCCGCAGAAAGTTTCACTGCTGGTTTGTTCCAAGCAGAAATTGCCCGCTTTC
CTGGCATTTCGAAAATTTTCAAAGGTGGTATGGTGACATACAGTGAAGAAACAAAACAATCTATATTACAAGTATCTCCC
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCGGAATGTGCGAAGGAAATGGCTGAAAATGTAAGCCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGTCCAGATAGTTTAGAAGGTCATCCTGCTGGCACTATTTGGATTGGAC
TAAGCGTTAAAGGTTATGAAACAGAGGCTTTTCAGTTTGTCTATGGAAGAGATCGAAACCATAATCGCCGCCGTGCAGTA
AAACAAGGATTTCAGTTAATTAAACAATTTTTAGACGCAAATTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.345

98.792

0.507
  cinA Streptococcus pneumoniae TIGR4

49.282

100

0.498
  cinA Streptococcus mitis SK321

49.043

100

0.495
  cinA Streptococcus mitis NCTC 12261

48.804

100

0.493
  cinA Streptococcus pneumoniae Rx1

48.565

100

0.49
  cinA Streptococcus pneumoniae R6

48.565

100

0.49
  cinA Streptococcus pneumoniae D39

48.325

100

0.488
  cinA Streptococcus mutans UA159

48.058

99.517

0.478
  cinA Streptococcus suis isolate S10

38.35

99.517

0.382