Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   O5O48_RS15760 Genome accession   NZ_CP114836
Coordinates   3411466..3411744 (-) Length   92 a.a.
NCBI ID   WP_088275167.1    Uniprot ID   A0AAQ1G6D1
Organism   Halopseudomonas sp. MFKK-1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3406466..3416744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O5O48_RS15740 - 3407530..3407931 (+) 402 WP_088275153.1 TM2 domain-containing protein -
  O5O48_RS15745 - 3408093..3408386 (-) 294 WP_269687565.1 YcgL domain-containing protein -
  O5O48_RS15750 rnd 3408383..3409504 (-) 1122 WP_332367346.1 ribonuclease D -
  O5O48_RS15755 - 3409985..3411403 (+) 1419 WP_269687567.1 methyl-accepting chemotaxis protein -
  O5O48_RS15760 comEA 3411466..3411744 (-) 279 WP_088275167.1 ComEA family DNA-binding protein Machinery gene
  O5O48_RS15765 - 3411896..3413110 (-) 1215 WP_088275419.1 O-succinylhomoserine sulfhydrylase -
  O5O48_RS15770 purF 3413158..3414663 (-) 1506 WP_269687568.1 amidophosphoribosyltransferase -
  O5O48_RS15775 - 3414712..3415194 (-) 483 WP_088275171.1 CvpA family protein -
  O5O48_RS15780 - 3415263..3415862 (-) 600 WP_088275173.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 9579.94 Da        Isoelectric Point: 4.6399

>NTDB_id=767234 O5O48_RS15760 WP_088275167.1 3411466..3411744(-) (comEA) [Halopseudomonas sp. MFKK-1]
MRHWISILGVVLSLWLVSPAWAQEVSVPTVNINTAGAAEIAEVLQGVGQAKADAIVAYREEHGAFGSVASLAEVKGIGAS
TLANNEGRIVLE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=767234 O5O48_RS15760 WP_088275167.1 3411466..3411744(-) (comEA) [Halopseudomonas sp. MFKK-1]
ATGCGTCACTGGATTAGCATCTTGGGTGTTGTTCTCAGTCTCTGGCTGGTATCTCCCGCCTGGGCTCAGGAAGTGTCTGT
ACCAACGGTCAATATCAATACCGCCGGCGCGGCAGAGATCGCCGAGGTGCTGCAGGGGGTAGGGCAGGCCAAGGCTGACG
CTATCGTTGCCTACCGCGAGGAGCATGGTGCTTTCGGGTCGGTAGCTTCGCTGGCCGAAGTGAAGGGGATTGGCGCCAGC
ACGCTGGCGAATAACGAGGGGCGGATTGTGCTTGAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(27-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

49.462

100

0.5
  comEA Vibrio campbellii strain DS40M4

43.956

98.913

0.435
  comEA Vibrio cholerae C6706

52.778

78.261

0.413
  comEA Vibrio cholerae strain A1552

52.778

78.261

0.413
  comEA/comE1 Glaesserella parasuis strain SC1401

52.055

79.348

0.413
  comE Neisseria gonorrhoeae MS11

48.649

80.435

0.391
  comE Neisseria gonorrhoeae MS11

48.649

80.435

0.391
  comE Neisseria gonorrhoeae MS11

48.649

80.435

0.391
  comE Neisseria gonorrhoeae MS11

48.649

80.435

0.391
  comEA Acinetobacter baylyi ADP1

42.857

91.304

0.391