Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   O5O48_RS01210 Genome accession   NZ_CP114836
Coordinates   267947..269203 (+) Length   418 a.a.
NCBI ID   WP_269687932.1    Uniprot ID   -
Organism   Halopseudomonas sp. MFKK-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 262947..274203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O5O48_RS01195 - 263477..265447 (-) 1971 WP_269687929.1 hypothetical protein -
  O5O48_RS01200 - 265527..265949 (-) 423 WP_269687930.1 pilin -
  O5O48_RS01205 pilB 266243..267943 (+) 1701 WP_269687931.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O5O48_RS01210 pilC 267947..269203 (+) 1257 WP_269687932.1 type II secretion system F family protein Machinery gene
  O5O48_RS01215 pilD 269207..270079 (+) 873 WP_269687933.1 A24 family peptidase Machinery gene
  O5O48_RS01220 coaE 270115..270717 (+) 603 WP_228245812.1 dephospho-CoA kinase -
  O5O48_RS01225 yacG 270714..270905 (+) 192 WP_088277640.1 DNA gyrase inhibitor YacG -
  O5O48_RS01230 - 270908..271855 (+) 948 WP_269687934.1 Nudix family hydrolase -
  O5O48_RS01235 ispH 272071..273015 (-) 945 WP_269687935.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  O5O48_RS01240 fkpB 273064..273495 (-) 432 WP_233049084.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  O5O48_RS01245 lspA 273541..274038 (-) 498 WP_228245808.1 signal peptidase II -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45792.56 Da        Isoelectric Point: 9.5125

>NTDB_id=767215 O5O48_RS01210 WP_269687932.1 267947..269203(+) (pilC) [Halopseudomonas sp. MFKK-1]
MAQQAALKKKPAARKAKEEKLYPFKWEGKDRKGTRIDGVLQGENAALVKTQLRKQGILVTKIKRESTLFGKRPKPIKPLD
IAFFTRQLATMMESGVPIIQAFEIIAEGADNPSVGKLVTQIKTDVAAGNTLADSLRQHPKYFDDLFCNLVESGEQSGRLE
SLLDRIATYKEKTEALKAKIKKAMTYPIAVIVVAVIVTAVMLLKVVPAFQEVFANFGAELPAFTLFVIGLSEWLQSWWFV
ALVLMIAIGYAYSQAHQRSKAFRDFEDRTLLKAPIVGDIVYQAAVARYARTLSTTFAAGVPLVDALDSVAGASGNVVFYN
AVMKIKEDVSAGSQLNFSMRATKVFPSLAVQMTGIGEESGNLDGMLEKVADYYEAEVDNKVDNLTTLLEPLIMSVLGILV
GGLIVAMYLPIFQLGNVV

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=767215 O5O48_RS01210 WP_269687932.1 267947..269203(+) (pilC) [Halopseudomonas sp. MFKK-1]
ATGGCGCAACAAGCCGCACTGAAAAAGAAACCCGCCGCCAGGAAGGCCAAGGAAGAAAAACTCTACCCCTTCAAGTGGGA
GGGCAAGGATCGCAAGGGCACCAGGATCGATGGTGTGCTTCAGGGCGAGAACGCCGCACTGGTTAAAACCCAGTTGCGCA
AGCAGGGCATTCTGGTCACCAAGATCAAGCGTGAATCAACCTTGTTCGGCAAGCGGCCAAAACCGATCAAGCCACTGGAT
ATTGCGTTTTTCACTCGCCAGCTGGCAACCATGATGGAATCCGGTGTCCCCATCATCCAGGCGTTTGAGATCATTGCCGA
AGGCGCGGACAACCCGAGCGTTGGCAAACTGGTCACGCAGATCAAGACAGACGTTGCCGCCGGCAACACACTGGCAGACT
CCTTGCGCCAGCACCCCAAGTATTTTGACGATCTGTTCTGCAACCTGGTTGAGTCGGGTGAGCAGTCGGGACGACTGGAA
TCGCTGCTTGATCGCATTGCGACCTACAAGGAAAAGACCGAGGCACTCAAGGCCAAGATCAAGAAGGCCATGACCTACCC
GATCGCGGTGATTGTGGTGGCGGTGATCGTAACGGCGGTCATGCTTCTGAAGGTTGTGCCAGCATTTCAGGAAGTGTTCG
CCAACTTTGGCGCCGAACTGCCGGCCTTTACCCTATTTGTGATCGGACTATCCGAGTGGCTGCAGTCATGGTGGTTTGTC
GCCTTGGTGCTGATGATTGCTATCGGTTACGCCTACTCACAAGCCCATCAACGATCAAAGGCCTTCCGTGATTTCGAGGA
CCGCACCCTGCTAAAGGCGCCGATTGTTGGCGACATTGTCTATCAGGCGGCGGTAGCGCGTTATGCTCGTACGCTGTCCA
CCACCTTCGCTGCCGGTGTACCGCTGGTGGATGCGCTGGACTCGGTCGCAGGCGCATCCGGTAACGTGGTGTTCTACAAC
GCGGTCATGAAAATCAAGGAAGATGTATCTGCTGGCTCCCAGCTCAATTTTTCCATGCGCGCCACCAAGGTCTTCCCTTC
GTTGGCGGTGCAGATGACCGGCATTGGTGAAGAGTCCGGTAACCTTGATGGCATGCTGGAGAAGGTGGCCGACTACTACG
AGGCCGAAGTCGACAACAAGGTCGATAACCTGACCACCCTGCTCGAGCCGCTGATCATGTCGGTGCTGGGTATTCTGGTC
GGTGGCCTGATCGTAGCCATGTACCTGCCGATCTTCCAGCTGGGTAACGTTGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(289-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

68.861

94.498

0.651
  pilC Acinetobacter baylyi ADP1

58.374

97.129

0.567
  pilC Acinetobacter baumannii D1279779

58.272

96.89

0.565
  pilC Legionella pneumophila strain ERS1305867

52.13

95.455

0.498
  pilG Neisseria meningitidis 44/76-A

46.569

97.608

0.455
  pilG Neisseria gonorrhoeae MS11

46.324

97.608

0.452
  pilC Vibrio campbellii strain DS40M4

41.687

96.411

0.402
  pilC Vibrio cholerae strain A1552

41.855

95.455

0.4