Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   O4546_RS02175 Genome accession   NZ_CP114590
Coordinates   439686..440900 (-) Length   404 a.a.
NCBI ID   WP_077456485.1    Uniprot ID   A0AB36K9U0
Organism   Salinivibrio kushneri strain TGB19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 434686..445900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4546_RS02150 (O4546_02150) mutT 436725..437120 (+) 396 WP_077673503.1 8-oxo-dGTP diphosphatase MutT -
  O4546_RS02155 (O4546_02155) yacG 437163..437363 (-) 201 WP_069363361.1 DNA gyrase inhibitor YacG -
  O4546_RS02160 (O4546_02160) zapD 437374..438114 (-) 741 WP_077456479.1 cell division protein ZapD -
  O4546_RS02165 (O4546_02165) coaE 438138..438752 (-) 615 WP_269587358.1 dephospho-CoA kinase -
  O4546_RS02170 (O4546_02170) pilD 438752..439621 (-) 870 WP_269587359.1 A24 family peptidase Machinery gene
  O4546_RS02175 (O4546_02175) pilC 439686..440900 (-) 1215 WP_077456485.1 type II secretion system F family protein Machinery gene
  O4546_RS02180 (O4546_02180) pilB 440910..442592 (-) 1683 WP_077520856.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O4546_RS02185 (O4546_02185) - 442663..443118 (-) 456 WP_269587360.1 pilin -
  O4546_RS02190 (O4546_02190) nadC 443365..444270 (-) 906 WP_269587361.1 carboxylating nicotinate-nucleotide diphosphorylase -
  O4546_RS02195 (O4546_02195) - 444431..445426 (+) 996 WP_077659064.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 45036.78 Da        Isoelectric Point: 10.1795

>NTDB_id=766679 O4546_RS02175 WP_077456485.1 439686..440900(-) (pilC) [Salinivibrio kushneri strain TGB19]
MAKSTLFIFHWRQAAARGEKKGQVFAYTERDARQELANQSIVPSRLIRRRLSSFQQRRHKAKAADITQFSRDLTTLLESG
IPIVQALNLMALNQVKAEMRLLVRHIRQQLEAGTNLSEALAHASPLFDRFYCDLVATGEQTGQLPEIFARLTLYREKQAL
LRSKVIKAMIYPSIVVSVALGVSAYLLVSVIPKFKRIFDSFGADLPWLTQQVLALSDIVSQHALTITLVVASLVAAHQLL
QRKNTTYQYHYHRWLLRLPVIGEVVSKACIAKFSRTLATTFSAGIPLLSGLQAATKSMTNAYYVHALKAVYQHTATGIPL
YQALRDSNSFPVMVTQMVMIGEESGSLDNMLNRIAQIYEAEVDNTVDNLGKIIEPLLILVLGLLIGGLVVAMYLPIFNLM
SVLG

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=766679 O4546_RS02175 WP_077456485.1 439686..440900(-) (pilC) [Salinivibrio kushneri strain TGB19]
ATGGCCAAATCCACCCTGTTTATCTTTCATTGGCGTCAAGCCGCCGCCCGTGGTGAAAAAAAAGGGCAGGTGTTCGCCTA
CACAGAGCGAGACGCACGCCAAGAGCTAGCGAACCAATCTATCGTCCCCAGCCGCCTCATACGCCGCCGGCTATCGAGCT
TTCAGCAGCGTCGTCATAAAGCCAAGGCAGCGGATATCACCCAGTTTTCACGTGATCTCACCACCTTGCTTGAGTCTGGG
ATCCCTATCGTACAAGCCCTGAACCTCATGGCGCTCAATCAGGTCAAAGCCGAAATGCGCTTGCTGGTGCGTCATATTCG
CCAGCAACTGGAGGCGGGCACCAATTTGAGTGAGGCGCTAGCGCACGCGAGCCCCTTGTTTGATCGCTTTTATTGCGATT
TAGTCGCAACGGGTGAGCAAACCGGGCAACTGCCGGAGATTTTTGCTCGCTTAACCCTATACCGTGAAAAGCAGGCGTTA
CTTCGCAGTAAAGTCATCAAAGCCATGATTTACCCCAGCATCGTGGTCAGCGTGGCCTTGGGCGTCAGTGCCTACCTGCT
GGTGTCCGTGATCCCGAAGTTTAAACGTATTTTTGATTCCTTCGGGGCCGATTTGCCTTGGCTGACCCAACAAGTGCTCG
CCTTATCCGACATCGTGAGCCAGCACGCATTGACCATCACGCTGGTCGTGGCGAGCCTTGTCGCCGCGCACCAGTTGCTA
CAGCGTAAAAACACGACCTACCAATATCACTATCATCGCTGGCTACTCCGGCTGCCCGTCATTGGTGAAGTGGTGAGCAA
AGCCTGCATCGCCAAGTTTTCTCGCACCCTAGCCACCACGTTTAGTGCCGGTATTCCGTTACTCTCTGGCTTACAAGCCG
CGACGAAATCCATGACTAACGCGTATTATGTCCACGCACTCAAGGCGGTGTATCAGCACACGGCCACCGGTATTCCGCTG
TATCAAGCCTTGCGTGACAGTAACAGCTTCCCCGTGATGGTGACGCAAATGGTGATGATTGGCGAAGAGTCGGGGTCGCT
CGATAATATGCTCAACCGCATCGCACAAATCTATGAAGCCGAAGTCGACAACACCGTAGACAACCTCGGTAAAATCATCG
AGCCCCTGTTAATTTTAGTACTCGGGCTATTGATTGGCGGCTTAGTGGTGGCCATGTACTTACCCATTTTCAATCTGATG
TCTGTTCTTGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(69-192)

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

51.385

98.267

0.505
  pilC Vibrio campbellii strain DS40M4

50.63

98.267

0.498
  pilC Acinetobacter baumannii D1279779

39.698

98.515

0.391
  pilC Acinetobacter baylyi ADP1

39.196

98.515

0.386
  pilG Neisseria meningitidis 44/76-A

38.653

99.257

0.384
  pilG Neisseria gonorrhoeae MS11

38.404

99.257

0.381
  pilC Legionella pneumophila strain ERS1305867

38.539

98.267

0.379