Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   O4546_RS02170 Genome accession   NZ_CP114590
Coordinates   438752..439621 (-) Length   289 a.a.
NCBI ID   WP_269587359.1    Uniprot ID   -
Organism   Salinivibrio kushneri strain TGB19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 433752..444621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4546_RS02145 (O4546_02145) secA 433930..436662 (+) 2733 WP_269587357.1 preprotein translocase subunit SecA -
  O4546_RS02150 (O4546_02150) mutT 436725..437120 (+) 396 WP_077673503.1 8-oxo-dGTP diphosphatase MutT -
  O4546_RS02155 (O4546_02155) yacG 437163..437363 (-) 201 WP_069363361.1 DNA gyrase inhibitor YacG -
  O4546_RS02160 (O4546_02160) zapD 437374..438114 (-) 741 WP_077456479.1 cell division protein ZapD -
  O4546_RS02165 (O4546_02165) coaE 438138..438752 (-) 615 WP_269587358.1 dephospho-CoA kinase -
  O4546_RS02170 (O4546_02170) pilD 438752..439621 (-) 870 WP_269587359.1 A24 family peptidase Machinery gene
  O4546_RS02175 (O4546_02175) pilC 439686..440900 (-) 1215 WP_077456485.1 type II secretion system F family protein Machinery gene
  O4546_RS02180 (O4546_02180) pilB 440910..442592 (-) 1683 WP_077520856.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O4546_RS02185 (O4546_02185) - 442663..443118 (-) 456 WP_269587360.1 pilin -
  O4546_RS02190 (O4546_02190) nadC 443365..444270 (-) 906 WP_269587361.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 31755.74 Da        Isoelectric Point: 7.1998

>NTDB_id=766678 O4546_RS02170 WP_269587359.1 438752..439621(-) (pilD) [Salinivibrio kushneri strain TGB19]
MLIFSSPLFIFFAGLFGLIIGSFLNVVIARVPIMMERRWRQECLATFPDADIDTPDAQRFDLCFPASHCPKCQQPIAWYD
NIPLLSWLVLKGRCRQCGTAISPRYPLVEVTSAIVCVLPAWLISSPAWAIAVMAASLTLLALTLIDWETLLLPDQLTLPL
MWAGIGLALSGISPVTLSESVIGAMVGYVSLWSLFWAFKLTTGKEGMGYGDFKLFAALGAWVGWQALPLLILFASLSGAI
VGGLLLRQQQKSLQHAFAFGPFIAVAGWLSLLWGDSLLHWYLSHILGVR

Nucleotide


Download         Length: 870 bp        

>NTDB_id=766678 O4546_RS02170 WP_269587359.1 438752..439621(-) (pilD) [Salinivibrio kushneri strain TGB19]
ATGTTGATATTCTCATCACCGTTATTCATTTTTTTTGCTGGCTTATTTGGTCTGATTATCGGTAGCTTTTTAAATGTGGT
CATCGCACGCGTGCCCATTATGATGGAACGCCGTTGGCGTCAAGAATGCTTGGCGACGTTTCCCGATGCTGACATTGACA
CGCCTGATGCGCAGCGCTTTGATTTGTGTTTTCCCGCCTCACACTGCCCAAAGTGCCAGCAGCCGATTGCCTGGTACGAT
AATATTCCTTTGCTCAGTTGGCTGGTGTTAAAAGGCCGCTGCCGTCAGTGTGGCACGGCGATCAGTCCACGCTACCCACT
GGTCGAGGTCACCAGTGCTATTGTCTGTGTGTTACCGGCATGGCTTATTTCCTCACCGGCATGGGCCATCGCGGTGATGG
CGGCCAGTCTCACCTTGCTGGCGCTGACCCTCATTGATTGGGAAACCTTGTTACTGCCCGACCAACTCACCTTACCCTTA
ATGTGGGCCGGAATCGGCCTCGCCCTCAGCGGCATCAGTCCCGTCACACTCAGTGAGAGTGTCATTGGCGCTATGGTCGG
TTATGTCAGCCTGTGGAGCCTCTTTTGGGCATTCAAGCTCACCACTGGCAAAGAAGGCATGGGCTATGGTGATTTTAAAC
TGTTTGCGGCACTGGGCGCTTGGGTCGGTTGGCAAGCTTTGCCGCTACTGATTTTATTCGCCTCACTCAGTGGCGCTATC
GTTGGGGGATTATTGCTTCGCCAACAACAAAAGAGCCTGCAGCACGCGTTTGCCTTTGGCCCCTTTATTGCCGTCGCAGG
TTGGCTAAGTCTGCTTTGGGGCGATAGCCTGTTACACTGGTATCTTTCACACATTCTAGGAGTGCGCTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(134-242)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(15-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

57.143

96.886

0.554
  pilD Vibrio campbellii strain DS40M4

53.381

97.232

0.519
  pilD Acinetobacter baumannii D1279779

48.352

94.464

0.457
  pilD Acinetobacter nosocomialis M2

47.985

94.464

0.453
  pilD Neisseria gonorrhoeae MS11

43.706

98.962

0.433