Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   N8M53_RS02035 Genome accession   NZ_CP114588
Coordinates   401936..403150 (-) Length   404 a.a.
NCBI ID   WP_269579291.1    Uniprot ID   -
Organism   Salinivibrio kushneri strain TGB11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 396936..408150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8M53_RS02010 (N8M53_02010) mutT 398968..399363 (+) 396 WP_269579286.1 8-oxo-dGTP diphosphatase MutT -
  N8M53_RS02015 (N8M53_02015) yacG 399412..399612 (-) 201 WP_269579287.1 DNA gyrase inhibitor YacG -
  N8M53_RS02020 (N8M53_02020) zapD 399623..400363 (-) 741 WP_269579288.1 cell division protein ZapD -
  N8M53_RS02025 (N8M53_02025) coaE 400388..401002 (-) 615 WP_269579289.1 dephospho-CoA kinase -
  N8M53_RS02030 (N8M53_02030) pilD 401002..401871 (-) 870 WP_269579290.1 prepilin peptidase Machinery gene
  N8M53_RS02035 (N8M53_02035) pilC 401936..403150 (-) 1215 WP_269579291.1 type II secretion system F family protein Machinery gene
  N8M53_RS02040 (N8M53_02040) pilB 403160..404842 (-) 1683 WP_269579292.1 type IV-A pilus assembly ATPase PilB Machinery gene
  N8M53_RS02045 (N8M53_02045) - 404850..405299 (-) 450 WP_269579293.1 pilin -
  N8M53_RS02050 (N8M53_02050) nadC 405547..406452 (-) 906 WP_269579294.1 carboxylating nicotinate-nucleotide diphosphorylase -
  N8M53_RS02055 (N8M53_02055) - 406612..407607 (+) 996 WP_269579295.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 45054.88 Da        Isoelectric Point: 10.2185

>NTDB_id=766648 N8M53_RS02035 WP_269579291.1 401936..403150(-) (pilC) [Salinivibrio kushneri strain TGB11]
MAKSTLFLFHWRQAAARGEKKGQLFAYTERDARQELASQSIVPTRLIRRRLSSFQQRRHKAKAADITQFSRDLTTLLESG
IPIVQALNLIALNQVKAEMRLLVRHIRQQLEAGTNLSDALAHASPLFDRFYCDLVATGEQTGQLPEIFARLTLYREKQAL
LRSKVIKAMIYPSIVVSVALGVSAYLLVFVIPKFKHIFNSFGAELPWLTRQVLALSDMVSQHALTITLMVTGLAALHLVL
QRKNATYQHHYHRWLLRLPVMGDVVSKACIAKFSRTLATTFSAGIPLLSGLQAATKSMTNAYYAHALKAVYQHTATGIPL
YQALRDSDSFPVTMTQMVMIGEESGSLDHMLNRVAQIYEAEVDNTVDNLGKIIEPLLILVLGLLIGGLVVAMYLPIFNLM
SVLG

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=766648 N8M53_RS02035 WP_269579291.1 401936..403150(-) (pilC) [Salinivibrio kushneri strain TGB11]
ATGGCCAAATCTACCCTGTTTCTTTTTCATTGGCGCCAGGCCGCCGCCCGTGGTGAAAAAAAAGGGCAATTGTTCGCCTA
TACCGAGCGAGACGCACGCCAAGAGCTAGCGAGTCAATCCATTGTCCCCACTCGCCTCATTCGCCGCCGGCTATCGAGTT
TTCAGCAGCGCCGCCATAAAGCCAAAGCCGCGGATATCACCCAGTTTTCACGCGATCTCACCACCCTGCTAGAGTCTGGG
ATCCCCATCGTACAAGCCCTCAACCTCATCGCGCTCAATCAGGTCAAAGCCGAAATGCGCTTGCTGGTGCGTCATATCCG
CCAGCAACTCGAGGCGGGTACCAATTTGAGCGATGCGTTGGCGCACGCGAGTCCCCTATTCGATCGCTTTTATTGCGATT
TGGTCGCAACGGGCGAACAAACCGGGCAACTGCCGGAGATCTTTGCTCGCCTGACCCTATACCGTGAAAAGCAGGCACTA
CTTCGCAGTAAAGTGATTAAAGCCATGATCTACCCTAGCATCGTGGTCAGCGTGGCATTAGGCGTCAGTGCCTATCTGTT
GGTGTTCGTGATCCCAAAATTTAAACATATTTTCAACTCATTCGGGGCAGAACTGCCTTGGCTCACGCGACAAGTCCTCG
CCTTATCCGACATGGTGAGTCAGCACGCCTTAACCATCACACTAATGGTGACGGGCCTTGCCGCTTTGCACCTAGTGCTA
CAGCGCAAAAATGCGACTTACCAACATCACTATCATCGCTGGCTACTCCGGCTCCCCGTCATGGGTGACGTGGTGAGCAA
AGCCTGCATCGCCAAGTTTTCTCGCACCTTAGCCACCACCTTTAGTGCCGGTATTCCGTTACTCTCTGGCTTACAAGCCG
CAACAAAATCCATGACCAACGCTTATTATGCCCACGCACTTAAGGCGGTATATCAACACACAGCCACCGGTATTCCGCTT
TACCAAGCATTGCGTGACAGTGATAGCTTCCCCGTGACGATGACACAAATGGTGATGATTGGTGAAGAATCGGGGTCGCT
CGATCATATGCTTAACCGTGTCGCACAAATCTATGAAGCGGAGGTCGATAACACCGTGGACAACCTCGGTAAAATCATCG
AGCCCCTGTTAATTTTAGTGCTGGGGCTATTGATTGGCGGCTTGGTGGTAGCCATGTATTTACCCATTTTCAATCTGATG
TCTGTTCTTGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)

Type II secretion system (T2SS), protein F (T2SSF)

(69-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

51.741

99.505

0.515
  pilC Vibrio campbellii strain DS40M4

49.118

98.267

0.483
  pilG Neisseria meningitidis 44/76-A

39.552

99.505

0.394
  pilG Neisseria gonorrhoeae MS11

39.303

99.505

0.391
  pilC Acinetobacter baumannii D1279779

39.447

98.515

0.389
  pilC Acinetobacter baylyi ADP1

38.945

98.515

0.384
  pilC Legionella pneumophila strain ERS1305867

38.035

98.267

0.374
  pilC Pseudomonas stutzeri DSM 10701

36.776

98.267

0.361