Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   O4598_RS12515 Genome accession   NZ_CP114586
Coordinates   2701031..2702140 (-) Length   369 a.a.
NCBI ID   WP_269599713.1    Uniprot ID   -
Organism   Salinivibrio kushneri strain TGB4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2696031..2707140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4598_RS12480 (O4598_12480) - 2696156..2696416 (-) 261 WP_269599711.1 DUF1488 family protein -
  O4598_RS12485 (O4598_12485) aroE 2696413..2697237 (-) 825 WP_269599712.1 shikimate dehydrogenase -
  O4598_RS12490 (O4598_12490) hemF 2697241..2698158 (-) 918 WP_096630350.1 oxygen-dependent coproporphyrinogen oxidase -
  O4598_RS12495 (O4598_12495) purE 2698337..2698819 (+) 483 WP_077458615.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  O4598_RS12500 (O4598_12500) - 2698824..2699972 (+) 1149 WP_077651046.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  O4598_RS12505 (O4598_12505) - 2699969..2700526 (-) 558 WP_077458613.1 type I DNA topoisomerase -
  O4598_RS12510 (O4598_12510) - 2700555..2701028 (-) 474 WP_069362355.1 DUF494 family protein -
  O4598_RS12515 (O4598_12515) dprA 2701031..2702140 (-) 1110 WP_269599713.1 DNA-processing protein DprA Machinery gene
  O4598_RS12520 (O4598_12520) - 2702130..2703191 (-) 1062 WP_269599714.1 LysM peptidoglycan-binding domain-containing protein -
  O4598_RS12525 (O4598_12525) def 2703309..2703821 (+) 513 WP_269599715.1 peptide deformylase -
  O4598_RS12530 (O4598_12530) fmt 2703829..2704773 (+) 945 WP_269599716.1 methionyl-tRNA formyltransferase -
  O4598_RS12535 (O4598_12535) rsmB 2704876..2706162 (+) 1287 WP_269599717.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39952.86 Da        Isoelectric Point: 6.8516

>NTDB_id=766636 O4598_RS12515 WP_269599713.1 2701031..2702140(-) (dprA) [Salinivibrio kushneri strain TGB4]
MDDKSLRGWLTLTQVPRLRVSQRRALLAKVPIDALCDQTHYELAAVGLTAEQCQAITHPNHAMIERSLEWARQDNCHLIG
FDHPAYPALLREISRPPLVLYVQGDLTCLAMPQLAMVGSRHATPQGLETAYQFAKQLVEHGVAITSGLALGIDGRAHKGA
LEGGGKTLAVLGSGLANVYPARHRALAKRIEAQGALVSEFWPDAPPRAEHFPRRNRLISGLSAGVLVVEAAPQSGSLITA
RYALEQNRSVFAIPGPIDQVQSRGCHQLIKQGAVLVDCVDDIISDVDSLVQFAVSQQHELFSDAPKLDTHEGLPFSALLA
NVGTNATCVDVLAERCNQPVHEIMMQLLDLELQGLVAAVPGGYVRTRRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=766636 O4598_RS12515 WP_269599713.1 2701031..2702140(-) (dprA) [Salinivibrio kushneri strain TGB4]
ATGGACGATAAATCGCTGCGAGGATGGTTGACGCTGACCCAAGTGCCGCGGTTGCGCGTCTCGCAACGGCGCGCGCTGTT
GGCCAAAGTGCCCATCGATGCGTTATGTGACCAAACGCATTATGAGCTTGCCGCGGTTGGCTTAACCGCTGAGCAATGTC
AGGCGATTACCCACCCCAACCATGCCATGATTGAACGCAGCCTTGAGTGGGCTAGGCAAGATAACTGCCACCTTATTGGC
TTTGATCATCCTGCCTACCCGGCACTACTCAGAGAGATCTCACGGCCACCTTTGGTCTTGTATGTGCAAGGAGATCTCAC
TTGCTTGGCGATGCCCCAGTTGGCGATGGTGGGCAGCCGTCACGCGACCCCACAAGGTTTAGAGACAGCGTATCAATTTG
CTAAACAACTGGTTGAGCATGGTGTTGCGATTACCAGTGGGCTTGCGCTCGGCATTGATGGCCGGGCACACAAAGGCGCA
CTCGAAGGCGGCGGTAAGACTTTGGCGGTGTTGGGAAGCGGGCTTGCCAATGTGTATCCCGCGCGACATCGCGCATTGGC
CAAGCGAATTGAAGCGCAAGGGGCTCTGGTTTCCGAGTTTTGGCCAGACGCGCCGCCAAGGGCCGAACACTTTCCGCGCC
GCAATCGACTGATCAGTGGGTTGTCGGCGGGTGTATTGGTGGTAGAGGCCGCACCGCAAAGTGGGTCACTGATCACGGCG
CGTTATGCGCTAGAGCAAAACCGGAGTGTGTTTGCGATTCCCGGTCCCATTGACCAAGTCCAATCGCGCGGTTGCCACCA
ATTGATAAAACAAGGTGCGGTGTTAGTTGACTGTGTTGATGATATTATAAGTGATGTGGATAGCTTGGTGCAGTTTGCTG
TGAGTCAGCAACATGAATTATTTAGTGATGCACCCAAGTTAGATACGCACGAAGGATTGCCATTTTCTGCGCTGTTGGCT
AACGTAGGGACTAACGCGACGTGTGTCGACGTACTGGCTGAGCGCTGCAACCAACCGGTTCACGAAATCATGATGCAGTT
GTTAGACTTAGAACTCCAGGGGCTTGTAGCAGCAGTACCCGGTGGCTATGTCAGAACGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-277)

DprA winged helix domain (DprA_WH)

(316-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

52.033

100

0.52
  dprA Vibrio cholerae strain A1552

50.267

100

0.509
  dprA Glaesserella parasuis strain SC1401

44.715

100

0.447
  dprA Legionella pneumophila strain ERS1305867

42.857

98.645

0.423
  dprA Haemophilus influenzae Rd KW20

43.363

91.87

0.398
  dprA Acinetobacter baumannii D1279779

40.964

89.973

0.369
  dprA Acinetobacter baumannii strain A118

40.663

89.973

0.366
  dprA Neisseria meningitidis strain C311

41.433

86.992

0.36
  dprA Neisseria meningitidis MC58

41.433

86.992

0.36