Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   O4598_RS02085 Genome accession   NZ_CP114586
Coordinates   412116..413330 (-) Length   404 a.a.
NCBI ID   WP_102505689.1    Uniprot ID   -
Organism   Salinivibrio kushneri strain TGB4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 407116..418330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4598_RS02060 (O4598_02060) mutT 409155..409550 (+) 396 WP_269599977.1 8-oxo-dGTP diphosphatase MutT -
  O4598_RS02065 (O4598_02065) yacG 409593..409793 (-) 201 WP_069363361.1 DNA gyrase inhibitor YacG -
  O4598_RS02070 (O4598_02070) zapD 409804..410544 (-) 741 WP_077456479.1 cell division protein ZapD -
  O4598_RS02075 (O4598_02075) coaE 410568..411182 (-) 615 WP_116644578.1 dephospho-CoA kinase -
  O4598_RS02080 (O4598_02080) pilD 411182..412051 (-) 870 WP_269599978.1 prepilin peptidase Machinery gene
  O4598_RS02085 (O4598_02085) pilC 412116..413330 (-) 1215 WP_102505689.1 type II secretion system F family protein Machinery gene
  O4598_RS02090 (O4598_02090) pilB 413340..415022 (-) 1683 WP_102505690.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O4598_RS02095 (O4598_02095) - 415093..415503 (-) 411 WP_102505691.1 pilin -
  O4598_RS02100 (O4598_02100) nadC 415750..416655 (-) 906 WP_269599981.1 carboxylating nicotinate-nucleotide diphosphorylase -
  O4598_RS02105 (O4598_02105) - 416816..417811 (+) 996 WP_077659064.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 44992.68 Da        Isoelectric Point: 10.1215

>NTDB_id=766619 O4598_RS02085 WP_102505689.1 412116..413330(-) (pilC) [Salinivibrio kushneri strain TGB4]
MAKSTLFIFHWRQAAARGEKKGQVFAYTERDARQELANQSIVPSRLIRRRLSSFQQRRHKAKAADITQFSRDLTTLLESG
IPIVQALNLMALNQVKAEMRLLVRHIRQQLEAGTNLSEALAHASPLFDRFYCDLVATGEQTGQLPEIFARLTLYREKQAL
LRSKVIKAMIYPSIVVSVALGVSAYLLVSVIPKFKRIFDSFGADLPWLTQQVLALSDIVSQHALTITLIVAGLAAAHQLL
QRKNTTYQYHYHRWLLRLPVIGEVVSKACIAKFSRTLATTFSAGIPLLSGLQAATQSMTNAYYVHALKAVYQHTATGIPL
YQALRDSNSFPVMVTQMVMIGEESGSLDNMLNRIAQIYEAEVDNTVDNLGKIIEPLLILVLGLLIGGLVVAMYLPIFNLM
SVLG

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=766619 O4598_RS02085 WP_102505689.1 412116..413330(-) (pilC) [Salinivibrio kushneri strain TGB4]
ATGGCCAAATCCACCCTGTTTATCTTTCATTGGCGTCAAGCCGCCGCCCGTGGTGAAAAAAAAGGCCAGGTGTTCGCCTA
TACAGAGCGAGACGCACGCCAAGAGCTAGCGAACCAATCTATCGTCCCCAGCCGCCTCATACGCCGTCGGCTATCGAGCT
TTCAGCAGCGCCGTCATAAAGCCAAGGCAGCGGATATCACCCAGTTTTCACGTGATCTCACCACCTTGCTTGAGTCTGGG
ATCCCTATCGTACAAGCCCTGAACCTCATGGCGCTCAATCAGGTCAAAGCCGAAATGCGCTTGCTGGTGCGTCATATTCG
CCAGCAACTGGAGGCGGGCACCAATTTGAGTGAGGCGCTAGCGCACGCGAGCCCCTTGTTTGATCGCTTTTATTGCGATT
TAGTCGCAACGGGTGAGCAAACCGGGCAACTGCCGGAGATTTTTGCTCGCTTAACCCTATACCGTGAAAAGCAGGCGTTA
CTTCGCAGTAAAGTCATCAAAGCCATGATTTACCCCAGCATCGTGGTCAGCGTGGCCTTGGGCGTCAGTGCCTACCTGCT
GGTGTCCGTGATCCCGAAGTTTAAACGTATTTTTGATTCCTTCGGGGCCGATTTGCCTTGGCTGACCCAACAAGTGCTCG
CCTTATCCGACATCGTGAGCCAGCACGCATTGACCATCACGCTGATCGTGGCGGGCCTTGCCGCCGCGCACCAGTTGCTA
CAGCGTAAAAACACGACCTACCAATATCACTATCATCGCTGGCTACTCCGACTGCCCGTCATTGGTGAAGTGGTGAGCAA
AGCCTGCATCGCCAAGTTTTCTCGCACCCTAGCCACCACGTTTAGTGCCGGTATTCCGTTACTCTCTGGCTTACAAGCCG
CGACGCAATCCATGACCAACGCCTATTATGTCCACGCACTCAAGGCGGTGTATCAGCACACGGCCACCGGTATTCCGCTG
TATCAAGCCTTGCGTGACAGTAACAGCTTCCCCGTGATGGTGACGCAAATGGTGATGATTGGCGAAGAGTCGGGGTCGCT
CGATAATATGCTCAACCGCATCGCACAAATCTATGAAGCCGAAGTCGACAACACCGTAGACAACCTCGGTAAAATCATCG
AGCCCCTGTTAATTTTAGTACTCGGGCTATTGATTGGCGGCTTAGTGGTGGCCATGTACTTACCCATTTTCAATCTGATG
TCTGTTCTTGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(69-192)

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

51.134

98.267

0.502
  pilC Vibrio campbellii strain DS40M4

50.126

98.267

0.493
  pilG Neisseria meningitidis 44/76-A

39.801

99.505

0.396
  pilG Neisseria gonorrhoeae MS11

39.552

99.505

0.394
  pilC Acinetobacter baumannii D1279779

39.698

98.515

0.391
  pilC Acinetobacter baylyi ADP1

38.945

98.515

0.384
  pilC Legionella pneumophila strain ERS1305867

38.539

98.267

0.379