Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   O4598_RS02080 Genome accession   NZ_CP114586
Coordinates   411182..412051 (-) Length   289 a.a.
NCBI ID   WP_269599978.1    Uniprot ID   -
Organism   Salinivibrio kushneri strain TGB4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 406182..417051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4598_RS02055 (O4598_02055) secA 406360..409092 (+) 2733 WP_269599976.1 preprotein translocase subunit SecA -
  O4598_RS02060 (O4598_02060) mutT 409155..409550 (+) 396 WP_269599977.1 8-oxo-dGTP diphosphatase MutT -
  O4598_RS02065 (O4598_02065) yacG 409593..409793 (-) 201 WP_069363361.1 DNA gyrase inhibitor YacG -
  O4598_RS02070 (O4598_02070) zapD 409804..410544 (-) 741 WP_077456479.1 cell division protein ZapD -
  O4598_RS02075 (O4598_02075) coaE 410568..411182 (-) 615 WP_116644578.1 dephospho-CoA kinase -
  O4598_RS02080 (O4598_02080) pilD 411182..412051 (-) 870 WP_269599978.1 prepilin peptidase Machinery gene
  O4598_RS02085 (O4598_02085) pilC 412116..413330 (-) 1215 WP_102505689.1 type II secretion system F family protein Machinery gene
  O4598_RS02090 (O4598_02090) pilB 413340..415022 (-) 1683 WP_102505690.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O4598_RS02095 (O4598_02095) - 415093..415503 (-) 411 WP_102505691.1 pilin -
  O4598_RS02100 (O4598_02100) nadC 415750..416655 (-) 906 WP_269599981.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 31817.89 Da        Isoelectric Point: 7.1819

>NTDB_id=766618 O4598_RS02080 WP_269599978.1 411182..412051(-) (pilD) [Salinivibrio kushneri strain TGB4]
MLIFSSPLFIFFAGLFGLIIGSFLNVVIARVPIMMERRWRQECLATFPDADIDTPDAQRFDLCFPASHCPKCQQPIAWYD
NIPLLSWLMLKGRCRQCGTAISPRYPLVEVTSAIVCVLPAWLISSPAWAIAVMAASLTLLALTLIDWETLLLPDQLTLPL
MWAGIGLALCGISPITLSESVIGAMVGYVSLWSLFWAFKLTTGKEGMGYGDFKLFAALGAWVGWQALPLLILFASLSGAI
VGGLLLRQQQKSLQHAFAFGPFIAVAGWLSLLWGDSLLHWYLSHILGVR

Nucleotide


Download         Length: 870 bp        

>NTDB_id=766618 O4598_RS02080 WP_269599978.1 411182..412051(-) (pilD) [Salinivibrio kushneri strain TGB4]
ATGTTGATATTCTCATCACCGTTATTCATTTTTTTTGCTGGCTTATTTGGTCTGATTATCGGTAGCTTTTTAAATGTGGT
CATCGCACGCGTGCCCATTATGATGGAACGCCGTTGGCGTCAAGAATGCTTGGCGACGTTTCCCGATGCTGACATTGACA
CGCCTGATGCGCAGCGCTTTGATTTGTGTTTTCCCGCCTCACACTGCCCAAAGTGCCAGCAGCCGATTGCCTGGTACGAT
AATATTCCTTTGCTCAGTTGGCTGATGTTAAAAGGCCGCTGCCGTCAGTGTGGCACGGCGATCAGTCCACGCTACCCACT
GGTCGAGGTCACCAGTGCTATTGTCTGTGTGTTACCGGCATGGCTTATTTCCTCACCGGCATGGGCCATCGCGGTAATGG
CGGCAAGTCTCACCTTGCTGGCGCTGACTCTCATTGATTGGGAAACCCTGTTGCTGCCCGACCAACTCACCTTACCCTTA
ATGTGGGCCGGAATCGGCCTCGCTCTCTGCGGCATCAGTCCTATCACCCTCAGTGAAAGTGTCATTGGTGCTATGGTCGG
TTATGTCAGCCTTTGGAGCCTCTTTTGGGCATTCAAGCTCACCACTGGCAAAGAAGGCATGGGCTATGGTGATTTTAAAC
TGTTTGCTGCTCTGGGCGCTTGGGTCGGTTGGCAAGCTTTGCCGCTACTGATTTTATTCGCCTCACTAAGTGGCGCTATT
GTTGGAGGATTATTGCTTCGCCAACAACAAAAGAGCCTGCAGCACGCGTTTGCCTTTGGCCCCTTTATTGCCGTCGCAGG
TTGGCTAAGTCTGCTTTGGGGCGATAGCCTGTTACACTGGTATCTTTCACACATTCTAGGAGTGCGCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(15-121)

Type IV leader peptidase family (Peptidase_A24)

(134-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

56.786

96.886

0.55
  pilD Vibrio campbellii strain DS40M4

53.025

97.232

0.516
  pilD Acinetobacter baumannii D1279779

47.985

94.464

0.453
  pilD Acinetobacter nosocomialis M2

47.619

94.464

0.45
  pilD Neisseria gonorrhoeae MS11

43.357

98.962

0.429