Detailed information NTG0766375

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: O4443_RS10975
• Genome accession: NZ_CP114551
• Coordinates: 2379825..2381027 (-)
• Length: 400 a.a.
• NCBI ID: WP_282454586.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. pauca strain OLI17A
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2374825..2386027

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O4443_RS10955 (O4443_10955)	-	2376046..2376723 (+)	678	WP_010894955.1	response regulator transcription factor	-
O4443_RS10960 (O4443_10960)	-	2376716..2378053 (+)	1338	WP_023908103.1	HAMP domain-containing sensor histidine kinase	-
O4443_RS10965 (O4443_10965)	coaE	2378320..2378943 (-)	624	WP_088372260.1	dephospho-CoA kinase	-
O4443_RS10970 (O4443_10970)	-	2378955..2379818 (-)	864	WP_088371977.1	A24 family peptidase	-
O4443_RS10975 (O4443_10975)	pilC	2379825..2381027 (-)	1203	WP_282454586.1	type II secretion system F family protein	Machinery gene
O4443_RS10980 (O4443_10980)	-	2380957..2381136 (+)	180	WP_282454587.1	hypothetical protein	-
O4443_RS10985 (O4443_10985)	-	2381469..2381921 (+)	453	WP_088371979.1	pilin	-
O4443_RS10990 (O4443_10990)	-	2383218..2383664 (+)	447	WP_010894963.1	pilin	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44154.13 Da
• Isoelectric Point: 10.1299

>NTDB_id=766375 O4443_RS10975 WP_282454586.1 2379825..2381027(-) (pilC) [Xylella fastidiosa subsp. pauca strain OLI17A]
MTSFLWEGTDKRGVKIKGEQTARTANLLRAELRRQGITPLVVKPRPKPLFGQAGKRITPKDIAFFSRQMATMMKAGVPIV
GALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKHPVYFDELYRNLVRAGERAGVLETVLDTIASYKENIEALKGK
IRKALFYPVAIVAVALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWWAMLALLIVVIGGVLFTYKRS
ESMQHLLDRLVLKFPVIGAIMHNSALARFSRTTAVTFRAGVPLVEALGIVAGATGNKVYSDAVFRMRDDVSVGYSINMSM
RQVGIFPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFIGVIVGGMVIAMYLPIFKLASVVG

Nucleotide

• Length: 1203 bp

>NTDB_id=766375 O4443_RS10975 WP_282454586.1 2379825..2381027(-) (pilC) [Xylella fastidiosa subsp. pauca strain OLI17A]
TTGACTTCGTTTCTTTGGGAAGGGACGGATAAGCGCGGTGTCAAAATCAAGGGGGAACAGACAGCACGCACGGCGAACTT
GTTGCGTGCTGAGCTACGTCGTCAAGGCATCACGCCTCTTGTGGTTAAGCCGAGGCCTAAGCCGCTGTTTGGTCAGGCAG
GGAAGCGGATCACTCCGAAGGACATTGCCTTTTTTAGTCGCCAGATGGCGACGATGATGAAAGCCGGTGTCCCCATTGTC
GGGGCGTTGGATATTTTGGCCAACGGTCAGAAGAATCCGCGTATGCGTACGATGGTCAATCAAATTAAAAATGATATTGA
AGGCGGTTCCTCGCTGTATGAATCAATCAGCAAGCACCCGGTATATTTCGATGAGCTTTATCGCAATCTGGTCAGGGCTG
GCGAGCGCGCGGGCGTGCTGGAGACGGTGCTTGATACGATTGCTAGTTATAAGGAGAACATTGAGGCTCTGAAGGGAAAA
ATTCGCAAGGCCTTGTTTTATCCTGTTGCTATTGTTGCGGTTGCTCTCATTGTTAGTTCGATTTTGTTGATATACGTGGT
GCCGCAGTTCGAGGATGTGTTCAAAGGATTCGGAGCGGAATTGCCTGCATTCACTCAGATGATTGTCAATTTTTCCAACT
TCATGCAGCGGTGGTGGTGGGCCATGTTGGCTCTGCTGATTGTTGTTATCGGTGGTGTTTTGTTTACTTACAAGCGCTCT
GAATCCATGCAACATCTGCTGGATAGGTTGGTGTTGAAGTTCCCGGTGATCGGGGCAATTATGCACAATAGCGCGCTTGC
TCGGTTCTCGCGAACAACAGCTGTTACTTTCCGTGCAGGGGTGCCACTGGTAGAGGCATTGGGTATCGTTGCTGGGGCAA
CCGGCAATAAGGTCTATTCGGATGCTGTGTTCCGCATGCGTGATGATGTCTCAGTTGGCTATTCTATAAATATGTCAATG
AGGCAAGTTGGTATCTTCCCTCATATGGTGGTGCAGATGGCTTCCATTGGTGAGGAAGCAGGTGCTCTGGACGCGATGCT
ATTTAAAGTCGCTGAGTACTATGAACAGGAAGTCAGTAACGCGGTCGATGGACTCAGCAGTTTGCTGGAACCGCTGATCA
TGGTCTTTATTGGTGTTATCGTCGGCGGCATGGTCATTGCTATGTATTTGCCGATCTTTAAGCTTGCTTCTGTCGTTGGA
TAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (269-391)

• Type II secretion system (T2SS), protein F (T2SSF) (65-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	54.545	99	0.54
pilC	Legionella pneumophila strain ERS1305867	52.228	100	0.528
pilC	Acinetobacter baylyi ADP1	51	100	0.51
pilC	Acinetobacter baumannii D1279779	50.5	100	0.505
pilG	Neisseria gonorrhoeae MS11	43.577	99.25	0.433
pilG	Neisseria meningitidis 44/76-A	42.965	99.5	0.428
pilC	Vibrio campbellii strain DS40M4	40.399	100	0.405
pilC	Vibrio cholerae strain A1552	40.25	100	0.403
pilC	Thermus thermophilus HB27	37.352	100	0.395