Detailed information NTG0766343

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: O4444_RS10550
• Genome accession: NZ_CP114549
• Coordinates: 2309530..2310732 (-)
• Length: 400 a.a.
• NCBI ID: WP_010894959.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. pauca strain ALM4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2304530..2315732

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O4444_RS10530 (O4444_10530)	-	2305751..2306428 (+)	678	WP_010894955.1	response regulator transcription factor	-
O4444_RS10535 (O4444_10535)	-	2306421..2307758 (+)	1338	WP_023908103.1	HAMP domain-containing sensor histidine kinase	-
O4444_RS10540 (O4444_10540)	coaE	2308025..2308648 (-)	624	WP_088372260.1	dephospho-CoA kinase	-
O4444_RS10545 (O4444_10545)	-	2308660..2309523 (-)	864	WP_088371977.1	A24 family peptidase	-
O4444_RS10550 (O4444_10550)	pilC	2309530..2310732 (-)	1203	WP_010894959.1	type II secretion system F family protein	Machinery gene
O4444_RS10555 (O4444_10555)	-	2311175..2311621 (+)	447	WP_282459591.1	pilin	-
O4444_RS10560 (O4444_10560)	-	2312925..2313371 (+)	447	WP_282459592.1	pilin	-
O4444_RS10565 (O4444_10565)	-	2313805..2314035 (-)	231	WP_282459593.1	hypothetical protein	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44112.05 Da
• Isoelectric Point: 10.1299

>NTDB_id=766343 O4444_RS10550 WP_010894959.1 2309530..2310732(-) (pilC) [Xylella fastidiosa subsp. pauca strain ALM4]
MTSFLWEGTDKRGVKIKGEQTARTANLLRAELRRQGITPLVVKPRPKPLFGQAGKRITPKDIAFFSRQMATMMKAGVPIV
GALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKHPVYFDELYRNLVRAGERAGVLETVLDTIASYKENIEALKGK
IRKALFYPVAIVAVALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWWAMLALLIVVIGGGLFTYKRS
ESMQHLLDRLVLKFPVIGAIMHNSALARFSRTTAVTFRAGVPLVEALGIVAGATGNKVYSDAVFRMRDDVSVGYSINMSM
RQVGIFPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFIGVIVGGMVIAMYLPIFKLASVVG

Nucleotide

• Length: 1203 bp

>NTDB_id=766343 O4444_RS10550 WP_010894959.1 2309530..2310732(-) (pilC) [Xylella fastidiosa subsp. pauca strain ALM4]
TTGACTTCGTTTCTTTGGGAAGGGACGGATAAGCGCGGTGTCAAAATCAAGGGGGAACAGACAGCACGCACGGCGAACTT
GTTGCGTGCTGAGCTACGTCGTCAAGGCATCACGCCTCTTGTGGTTAAGCCTAGGCCTAAGCCGCTGTTTGGTCAGGCAG
GGAAGCGGATCACTCCGAAGGACATTGCCTTTTTTAGTCGCCAGATGGCGACGATGATGAAAGCCGGTGTCCCCATTGTC
GGGGCGTTGGATATTTTGGCCAACGGTCAGAAGAATCCGCGTATGCGTACGATGGTCAATCAAATTAAAAATGATATTGA
AGGCGGTTCCTCGCTGTATGAATCAATCAGCAAGCACCCGGTATATTTCGATGAGCTTTATCGCAATCTGGTCAGGGCTG
GCGAGCGCGCGGGCGTGCTGGAGACGGTGCTTGATACGATTGCTAGTTATAAGGAGAACATTGAGGCTCTGAAGGGAAAA
ATTCGCAAGGCCTTGTTTTATCCTGTTGCTATTGTTGCGGTTGCTCTCATTGTTAGTTCGATTTTGTTGATATACGTGGT
GCCGCAGTTCGAGGATGTGTTCAAAGGATTCGGAGCGGAATTGCCTGCATTCACTCAGATGATTGTCAATTTTTCCAACT
TCATGCAGCGGTGGTGGTGGGCCATGTTGGCTCTGCTGATTGTTGTTATCGGTGGTGGTTTGTTTACTTACAAGCGCTCT
GAATCCATGCAACATCTGCTGGATAGGTTGGTGTTGAAGTTCCCGGTGATCGGGGCAATTATGCACAATAGCGCGCTTGC
TCGGTTCTCGCGAACAACAGCTGTTACTTTCCGTGCAGGGGTGCCACTGGTAGAGGCATTGGGTATCGTTGCTGGGGCAA
CCGGCAATAAGGTCTATTCGGATGCTGTGTTCCGCATGCGTGATGATGTCTCAGTTGGCTATTCTATAAATATGTCAATG
AGGCAAGTTGGTATCTTCCCTCATATGGTGGTGCAGATGGCTTCCATTGGTGAGGAAGCAGGTGCTCTGGACGCGATGCT
ATTTAAAGTCGCTGAGTACTATGAACAGGAAGTCAGTAACGCGGTCGATGGACTCAGCAGTTTGCTGGAACCGCTGATCA
TGGTCTTTATTGGTGTTATCGTCGGCGGCATGGTCATTGCTATGTATTTGCCGATCTTTAAGCTTGCTTCTGTCGTTGGA
TAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (269-391)

• Type II secretion system (T2SS), protein F (T2SSF) (65-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	54.5	100	0.545
pilC	Legionella pneumophila strain ERS1305867	52.099	100	0.528
pilC	Acinetobacter baylyi ADP1	51	100	0.51
pilC	Acinetobacter baumannii D1279779	50.5	100	0.505
pilG	Neisseria gonorrhoeae MS11	43.467	99.5	0.432
pilG	Neisseria meningitidis 44/76-A	42.965	99.5	0.428
pilC	Vibrio cholerae strain A1552	40.943	100	0.413
pilC	Vibrio campbellii strain DS40M4	40.399	100	0.405
pilC	Thermus thermophilus HB27	37.352	100	0.395