Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   O1450_RS14475 Genome accession   NZ_CP114256
Coordinates   2983914..2985140 (+) Length   408 a.a.
NCBI ID   WP_269228986.1    Uniprot ID   A0A9E9L4V7
Organism   Acinetobacter sp. TR11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2978914..2990140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1450_RS14440 (O1450_14440) rimP 2979546..2980070 (-) 525 WP_269228983.1 ribosome maturation factor RimP -
  O1450_RS14460 (O1450_14460) secG 2980696..2981025 (-) 330 WP_005162938.1 preprotein translocase subunit SecG -
  O1450_RS14465 (O1450_14465) tpiA 2981038..2981829 (-) 792 WP_269228984.1 triose-phosphate isomerase -
  O1450_RS14470 (O1450_14470) pilB 2982174..2983889 (+) 1716 WP_269228985.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O1450_RS14475 (O1450_14475) pilC 2983914..2985140 (+) 1227 WP_269228986.1 type II secretion system F family protein Machinery gene
  O1450_RS14480 (O1450_14480) pilD 2985140..2986000 (+) 861 WP_269228987.1 A24 family peptidase Machinery gene
  O1450_RS14485 (O1450_14485) coaE 2986002..2986607 (+) 606 WP_269228988.1 dephospho-CoA kinase -
  O1450_RS14490 (O1450_14490) - 2986604..2987515 (-) 912 WP_269228989.1 DMT family transporter -
  O1450_RS14495 (O1450_14495) rlmB 2987546..2988295 (-) 750 WP_269228990.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  O1450_RS14500 (O1450_14500) - 2988477..2988803 (-) 327 WP_004659291.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44987.51 Da        Isoelectric Point: 9.8648

>NTDB_id=765265 O1450_RS14475 WP_269228986.1 2983914..2985140(+) (pilC) [Acinetobacter sp. TR11]
MAVKKAQMMPTFAYEGIDRKGAKIKGEVPARNMALAKVTLRKQGITIKNIREKRKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPISVLIVAVIVTVILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSNWTQKYWFILIIVIATLIA
CVLETKKRSKKFRDFLDKMALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRVSNKFPSMAIQMVAIGEESGALDTMLDKVATHFENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVM

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=765265 O1450_RS14475 WP_269228986.1 2983914..2985140(+) (pilC) [Acinetobacter sp. TR11]
ATGGCAGTTAAAAAAGCGCAAATGATGCCTACTTTTGCCTATGAAGGAATAGATCGTAAAGGGGCTAAAATCAAAGGGGA
AGTTCCAGCACGCAACATGGCTTTAGCCAAAGTCACGTTACGAAAACAAGGAATTACCATTAAAAATATTCGAGAAAAAC
GCAAAAATATTCTCGAAGGTTTAATGAAGAAAAAAGTATCAACATTAGATATTACGATTTTTACTCGTCAATTAGCAACC
ATGATGAAAGCAGGCGTACCCTTAGTACAAGGCTTTGAGATCGTCGCCGAGGGTTTAGAAAATCCCTCTATGCGTGAAGT
TGTACTAGGAATTAAAGGGGAAGTTGAAGGTGGCAATACATTTGCTGGCGCGCTAAAAAAATATCCACAACATTTTGATA
ATCTATTCTGTTCATTAGTTGAATCGGGTGAGCAATCGGGTGCATTAGAAACTATGCTAGATCGTGTTGCGATCTATAAA
GAAAAAAGCGAATTATTAAAACAAAAAATTAAAAAAGCCATGAAATATCCAATTAGTGTTCTTATTGTAGCCGTGATTGT
AACTGTGATTTTAATGGTTAAAGTCGTTCCAGTGTTTCAAGACCTATTTAGTTCCTTCGGTGCAGATCTTCCAGCATTTA
CTCAAATGGTTGTAAACATGTCCAATTGGACACAGAAATACTGGTTTATCTTAATTATAGTAATTGCAACATTAATTGCC
TGCGTCTTAGAAACAAAAAAACGTAGTAAAAAATTCAGAGACTTTTTAGATAAAATGGCACTCAAAGCACCTATTTTTGG
TGATCTAGTCTATAAAGCGATTATTGCTCGTTATAGCCGTACACTTGCAACCACTTTTGCCGCTGGTGTACCACTGATTG
ATGCTCTCGAATCTACAGCTGGTGCAACGAATAATGTTGTTTACGAAGAAGCTGTGATGAAAATTCGTGAGGATGTCGCA
ACAGGTCAACAGCTACAATTTGCGATGCGTGTGTCAAATAAATTCCCGTCCATGGCGATTCAAATGGTTGCAATTGGTGA
AGAATCTGGAGCATTGGACACGATGTTAGATAAGGTCGCAACACATTTTGAAAATGAAGTGGATAATGCAGTCGATGGCT
TAACATCAATGATGGAACCACTGATCATGGCGGTATTAGGTGTACTCGTGGGTGGTCTAGTTATCGCGATGTACCTTCCT
ATTTTCCAAATGGGATCAGTAATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.435

99.755

0.892
  pilC Acinetobacter baylyi ADP1

82.353

100

0.824
  pilC Pseudomonas stutzeri DSM 10701

59.259

99.265

0.588
  pilC Legionella pneumophila strain ERS1305867

51.613

98.775

0.51
  pilG Neisseria meningitidis 44/76-A

45.592

97.304

0.444
  pilG Neisseria gonorrhoeae MS11

45.592

97.304

0.444
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

42.079

99.02

0.417