Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   O1450_RS14480 Genome accession   NZ_CP114256
Coordinates   2985140..2986000 (+) Length   286 a.a.
NCBI ID   WP_269228987.1    Uniprot ID   -
Organism   Acinetobacter sp. TR11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2980140..2991000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1450_RS14460 (O1450_14460) secG 2980696..2981025 (-) 330 WP_005162938.1 preprotein translocase subunit SecG -
  O1450_RS14465 (O1450_14465) tpiA 2981038..2981829 (-) 792 WP_269228984.1 triose-phosphate isomerase -
  O1450_RS14470 (O1450_14470) pilB 2982174..2983889 (+) 1716 WP_269228985.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O1450_RS14475 (O1450_14475) pilC 2983914..2985140 (+) 1227 WP_269228986.1 type II secretion system F family protein Machinery gene
  O1450_RS14480 (O1450_14480) pilD 2985140..2986000 (+) 861 WP_269228987.1 A24 family peptidase Machinery gene
  O1450_RS14485 (O1450_14485) coaE 2986002..2986607 (+) 606 WP_269228988.1 dephospho-CoA kinase -
  O1450_RS14490 (O1450_14490) - 2986604..2987515 (-) 912 WP_269228989.1 DMT family transporter -
  O1450_RS14495 (O1450_14495) rlmB 2987546..2988295 (-) 750 WP_269228990.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  O1450_RS14500 (O1450_14500) - 2988477..2988803 (-) 327 WP_004659291.1 pyrimidine/purine nucleoside phosphorylase -
  O1450_RS14505 (O1450_14505) recN 2989146..2990804 (+) 1659 WP_269228991.1 DNA repair protein RecN -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31913.35 Da        Isoelectric Point: 7.5618

>NTDB_id=765266 O1450_RS14480 WP_269228987.1 2985140..2986000(+) (pilD) [Acinetobacter sp. TR11]
MHQFLSYFIDNPTALYVAVGLLSLCIGSFLNVVIYRTPKMMEQEWHHECQMLLHPEQPIIDETKLTLSTPPSTCPKCKSA
IHWYQNIPVMSWLMLRGKCGACQNPISIRYPLIELLTMICSLIVVAIFGATVQMLFGLILTWVLITLTFIDFDTQLLPDR
FTLPLAALGLGINSFTIYTSAGSAIWGYLIGFLCLWIVYYIFKLVTGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSV
VGAIIGIILIKMRGENQPFAFGPYIAIAGWIAFLWGNQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=765266 O1450_RS14480 WP_269228987.1 2985140..2986000(+) (pilD) [Acinetobacter sp. TR11]
ATGCATCAATTTTTATCTTACTTTATAGACAACCCAACTGCGTTATATGTCGCAGTTGGACTTTTAAGTTTATGCATTGG
TAGTTTTTTAAATGTCGTCATCTATAGAACACCAAAGATGATGGAACAAGAATGGCATCATGAATGCCAAATGTTGTTAC
ACCCAGAACAACCTATAATAGACGAAACTAAATTAACCTTAAGCACCCCACCATCTACATGTCCAAAATGTAAATCTGCT
ATTCACTGGTATCAAAATATTCCTGTAATGAGTTGGTTAATGCTTCGTGGCAAATGTGGTGCTTGCCAAAATCCAATTAG
TATTCGCTATCCACTTATTGAACTATTAACAATGATTTGCTCATTAATAGTAGTTGCTATATTTGGTGCGACCGTACAAA
TGTTATTTGGCTTAATACTCACTTGGGTCTTAATCACATTAACGTTTATTGATTTCGACACACAGCTATTACCCGATCGC
TTTACCTTACCACTTGCCGCACTAGGCTTGGGAATCAATAGTTTCACTATTTATACTTCTGCTGGTTCAGCGATTTGGGG
CTATTTGATTGGCTTTCTATGCTTATGGATTGTTTACTATATCTTTAAACTCGTCACAGGCAAGGAAGGTATGGGCTATG
GTGATTTTAAACTACTTGCAGCTTTAGGTGCTTGGATGGGACCATTGATGCTCCCCCTAATTGTGCTACTCTCTTCAGTT
GTTGGTGCAATTATTGGAATTATTTTGATAAAAATGCGTGGTGAAAACCAACCATTTGCATTTGGTCCTTATATTGCAAT
TGCTGGCTGGATTGCATTTTTATGGGGAAATCAAATTATGAAAATATATCTAGGTGGATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

81.119

100

0.811
  pilD Acinetobacter nosocomialis M2

81.119

100

0.811
  pilD Vibrio cholerae strain A1552

54.044

95.105

0.514
  pilD Vibrio campbellii strain DS40M4

51.449

96.503

0.497
  pilD Neisseria gonorrhoeae MS11

47.348

92.308

0.437