Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   O1Q84_RS16905 Genome accession   NZ_CP114194
Coordinates   3473866..3474978 (-) Length   370 a.a.
NCBI ID   WP_069535746.1    Uniprot ID   A0AA47JGA1
Organism   Vibrio parahaemolyticus strain vp-HL-202005     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3468866..3479978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q84_RS16875 (O1Q84_16875) hemF 3469327..3470244 (-) 918 WP_017449330.1 oxygen-dependent coproporphyrinogen oxidase -
  O1Q84_RS16880 (O1Q84_16880) - 3470292..3470849 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  O1Q84_RS16885 (O1Q84_16885) purE 3471049..3471534 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  O1Q84_RS16890 (O1Q84_16890) - 3471539..3472672 (+) 1134 WP_069535748.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  O1Q84_RS16895 (O1Q84_16895) - 3472736..3473305 (-) 570 WP_069535747.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  O1Q84_RS16900 (O1Q84_16900) - 3473384..3473863 (-) 480 WP_005461440.1 DUF494 family protein -
  O1Q84_RS16905 (O1Q84_16905) dprA 3473866..3474978 (-) 1113 WP_069535746.1 DNA-processing protein DprA Machinery gene
  O1Q84_RS16910 (O1Q84_16910) - 3474962..3476056 (-) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  O1Q84_RS16915 (O1Q84_16915) def 3476195..3476713 (+) 519 WP_005461416.1 peptide deformylase -
  O1Q84_RS16920 (O1Q84_16920) fmt 3476747..3477694 (+) 948 WP_069535745.1 methionyl-tRNA formyltransferase -
  O1Q84_RS16925 (O1Q84_16925) rsmB 3477775..3479058 (+) 1284 WP_005394040.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39927.55 Da        Isoelectric Point: 6.4144

>NTDB_id=764993 O1Q84_RS16905 WP_069535746.1 3473866..3474978(-) (dprA) [Vibrio parahaemolyticus strain vp-HL-202005]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSDQLYQLGLTNKQLQAWASADKEVDACLMWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRSLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGASLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=764993 O1Q84_RS16905 WP_069535746.1 3473866..3474978(-) (dprA) [Vibrio parahaemolyticus strain vp-HL-202005]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAATGTGGCTAGCCACTTCTACAAATCAT
CACATCCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATAGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CTCGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGAGGTAAGACGATAGCTGTGCTGGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTAGTTTAGCGCAGCGAGTAACAGAGAATGGAGCACTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGAGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCAGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.784

100

0.838
  dprA Vibrio cholerae strain A1552

58.378

100

0.584
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Legionella pneumophila strain ERS1305867

47.853

88.108

0.422
  dprA Haemophilus influenzae Rd KW20

46.291

91.081

0.422
  dprA Neisseria meningitidis strain C311

37.949

100

0.4
  dprA Neisseria meningitidis MC58

37.949

100

0.4
  dprA Neisseria gonorrhoeae MS11

36.082

100

0.378
  dprA Neisseria gonorrhoeae strain FA1090

35.825

100

0.376