Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   O2T11_RS16075 Genome accession   NZ_CP114186
Coordinates   3361898..3363010 (-) Length   370 a.a.
NCBI ID   WP_140078999.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain PH1273     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3356898..3368010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2T11_RS16045 (O2T11_16045) hemF 3357359..3358276 (-) 918 WP_029823250.1 oxygen-dependent coproporphyrinogen oxidase -
  O2T11_RS16050 (O2T11_16050) - 3358324..3358881 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  O2T11_RS16055 (O2T11_16055) purE 3359081..3359566 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  O2T11_RS16060 (O2T11_16060) - 3359571..3360698 (+) 1128 WP_029823251.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  O2T11_RS16065 (O2T11_16065) - 3360768..3361337 (-) 570 WP_021449061.1 type I DNA topoisomerase -
  O2T11_RS16070 (O2T11_16070) - 3361416..3361895 (-) 480 WP_005461440.1 DUF494 family protein -
  O2T11_RS16075 (O2T11_16075) dprA 3361898..3363010 (-) 1113 WP_140078999.1 DNA-processing protein DprA Machinery gene
  O2T11_RS16080 (O2T11_16080) - 3362994..3364088 (-) 1095 WP_025636856.1 LysM peptidoglycan-binding domain-containing protein -
  O2T11_RS16085 (O2T11_16085) def 3364227..3364745 (+) 519 WP_005461416.1 peptide deformylase -
  O2T11_RS16090 (O2T11_16090) fmt 3364779..3365726 (+) 948 WP_020839886.1 methionyl-tRNA formyltransferase -
  O2T11_RS16095 (O2T11_16095) rsmB 3365807..3367090 (+) 1284 WP_140079000.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39854.41 Da        Isoelectric Point: 6.3410

>NTDB_id=764941 O2T11_RS16075 WP_140078999.1 3361898..3363010(-) (dprA) [Vibrio parahaemolyticus strain PH1273]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSEQLYQLGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHVYPAHHRGLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFSQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=764941 O2T11_RS16075 WP_140078999.1 3361898..3363010(-) (dprA) [Vibrio parahaemolyticus strain PH1273]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTTGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGAACAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGGAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATGTTTATCCTGCTCATCA
TCGTGGTTTAGCGCAGCGAGTAACAGAAAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATTATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTTCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCAGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGTTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(317-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.595

100

0.846
  dprA Vibrio cholerae strain A1552

58.919

100

0.589
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Legionella pneumophila strain ERS1305867

47.239

88.108

0.416
  dprA Neisseria meningitidis MC58

37.692

100

0.397
  dprA Neisseria meningitidis strain C311

37.692

100

0.397
  dprA Haemophilus influenzae Rd KW20

51.254

75.405

0.386
  dprA Neisseria gonorrhoeae MS11

35.567

100

0.373
  dprA Neisseria gonorrhoeae strain FA1090

35.309

100

0.37