Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   O1N17_RS16170 Genome accession   NZ_CP114183
Coordinates   3366732..3367844 (-) Length   370 a.a.
NCBI ID   WP_025521638.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain PH1339     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3361732..3372844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1N17_RS16140 (O1N17_16130) hemF 3362193..3363110 (-) 918 WP_024699626.1 oxygen-dependent coproporphyrinogen oxidase -
  O1N17_RS16145 (O1N17_16135) - 3363158..3363715 (-) 558 WP_005461456.1 L-threonylcarbamoyladenylate synthase -
  O1N17_RS16150 (O1N17_16140) purE 3363915..3364400 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  O1N17_RS16155 (O1N17_16145) - 3364405..3365532 (+) 1128 WP_029802047.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  O1N17_RS16160 (O1N17_16150) - 3365602..3366171 (-) 570 WP_021449061.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  O1N17_RS16165 (O1N17_16155) - 3366250..3366729 (-) 480 WP_005461440.1 DUF494 family protein -
  O1N17_RS16170 (O1N17_16160) dprA 3366732..3367844 (-) 1113 WP_025521638.1 DNA-processing protein DprA Machinery gene
  O1N17_RS16175 (O1N17_16165) - 3367828..3368922 (-) 1095 WP_025636856.1 LysM peptidoglycan-binding domain-containing protein -
  O1N17_RS16180 (O1N17_16170) def 3369061..3369579 (+) 519 WP_031856121.1 peptide deformylase -
  O1N17_RS16185 (O1N17_16175) fmt 3369613..3370560 (+) 948 WP_029804725.1 methionyl-tRNA formyltransferase -
  O1N17_RS16190 (O1N17_16180) rsmB 3370640..3371923 (+) 1284 WP_031856122.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39913.52 Da        Isoelectric Point: 6.4129

>NTDB_id=764894 O1N17_RS16170 WP_025521638.1 3366732..3367844(-) (dprA) [Vibrio parahaemolyticus strain PH1339]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSDQLYQLGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRSLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=764894 O1N17_RS16170 WP_025521638.1 3366732..3367844(-) (dprA) [Vibrio parahaemolyticus strain PH1339]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTTGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAATTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTAGTTTAGCGCAGCGAGTAACAGAGAATGGAGCACTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGAGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAGAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTAGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.324

100

0.843
  dprA Vibrio cholerae strain A1552

58.649

100

0.586
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Legionella pneumophila strain ERS1305867

47.853

88.108

0.422
  dprA Haemophilus influenzae Rd KW20

46.291

91.081

0.422
  dprA Neisseria meningitidis strain C311

37.949

100

0.4
  dprA Neisseria meningitidis MC58

37.949

100

0.4
  dprA Neisseria gonorrhoeae MS11

36.082

100

0.378
  dprA Neisseria gonorrhoeae strain FA1090

35.825

100

0.376