Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   O0R49_RS08830 Genome accession   NZ_CP114177
Coordinates   1715274..1716524 (+) Length   416 a.a.
NCBI ID   WP_269196362.1    Uniprot ID   -
Organism   Bacillus safensis strain PLA 1006     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1710274..1721524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R49_RS08805 (O0R49_08805) ymfI 1711692..1712423 (+) 732 WP_269196360.1 elongation factor P 5-aminopentanone reductase -
  O0R49_RS08810 (O0R49_08810) - 1712497..1712754 (+) 258 WP_095408546.1 DUF3243 domain-containing protein -
  O0R49_RS08815 (O0R49_08815) - 1712886..1713677 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  O0R49_RS08820 (O0R49_08820) - 1713701..1714600 (+) 900 WP_205184927.1 helix-turn-helix domain-containing protein -
  O0R49_RS08825 (O0R49_08825) pgsA 1714676..1715257 (+) 582 WP_269196361.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  O0R49_RS08830 (O0R49_08830) cinA 1715274..1716524 (+) 1251 WP_269196362.1 competence/damage-inducible protein A Machinery gene
  O0R49_RS08835 (O0R49_08835) recA 1716703..1717746 (+) 1044 WP_047202210.1 recombinase RecA Machinery gene
  O0R49_RS08840 (O0R49_08840) - 1717890..1719065 (+) 1176 WP_269196363.1 serine hydrolase domain-containing protein -
  O0R49_RS08845 (O0R49_08845) rny 1719299..1720861 (+) 1563 WP_003211958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45618.71 Da        Isoelectric Point: 4.7995

>NTDB_id=764709 O0R49_RS08830 WP_269196362.1 1715274..1716524(+) (cinA) [Bacillus safensis strain PLA 1006]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQDYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMLVQEDDTFYMLLPGPPSEL
HPMFENEAKPLISETLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQMNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETETKILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTHEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=764709 O0R49_RS08830 WP_269196362.1 1715274..1716524(+) (cinA) [Bacillus safensis strain PLA 1006]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTATTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAGGCCATTCAGGTGGCGCAGGAAAGATCTAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACTAAAGATGACTTA
ACAAAAGAAACGATTGCGAGCACGCTCGGGAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAATCGATTCAAGACTACTT
TCGAAAGACCGGCCGCGATATGTCACCGAACAACCGTAAACAGGCGCTCGTTCTAGAAGGATCTGATGTGCTTGTGAACC
GTTTCGGGATGGCCCCAGGTATGCTTGTTCAAGAAGACGATACGTTTTATATGCTTCTTCCTGGACCACCAAGTGAACTG
CACCCGATGTTTGAAAATGAGGCAAAGCCGCTGATCTCTGAGACACTTGGCTTAAAGGAAAAAATCGTGTCTGTTGTTCT
GCGTTTCTTCGGAATCGGTGAATCGCAGCTTGAAACAGACCTAGAAGACTTAATTGATGCTCAAATGAATCCGACGATTG
CACCACTCGCATCTGACGGTGAAGTGACGCTAAGGCTAACTGCTAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAACGAAAATTTTAGCGCGGGTAGGTGAGTATTTCTACGGATATGGGGATACATCACTTGTCCGCGAAGC
GTCCAAAGCCTTGCACGAACACGGAAAAACAGTAGCAGCAGCAGAAAGCCTGACTGGCGGAATGTTCTCCGAATGGCTGA
CAGATCTCGAAGGAGCGTCATCCATTTTGAACGGAAGTGTGGTTTGTTATACAAACCAAGTCAAACAGCAGGTACTTGGC
TGCCGGGAGGAAACATTGTCTTCCCATGGCGCTGTCAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGGGTTAGAAAGCT
GACCGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGCCCTGATACCCATGAGGGTCAGCCTGTTGGAAAAGTGT
TCATTGGACTATCAACAAAAGACCAGACGGACGTGTTTGAATGGATGTTTACAGGCAGTCGGTCGGGCATTCGAAAGCGC
GCTGTGAAATATGGCCTGCATCACTTACTCAACTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.699

99.76

0.745
  cinA Streptococcus mutans UA159

48.558

100

0.486
  cinA Streptococcus mitis SK321

47.268

100

0.478
  cinA Streptococcus pneumoniae TIGR4

47.268

100

0.478
  cinA Streptococcus mitis NCTC 12261

47.031

100

0.476
  cinA Streptococcus pneumoniae Rx1

47.031

100

0.476
  cinA Streptococcus pneumoniae R6

47.031

100

0.476
  cinA Streptococcus pneumoniae D39

46.793

100

0.474
  cinA Streptococcus suis isolate S10

42.857

90.865

0.389