Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   OIY87_RS11590 Genome accession   NZ_CP113954
Coordinates   2322169..2323428 (-) Length   419 a.a.
NCBI ID   WP_269725030.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain XH2168     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 2317169..2328428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIY87_RS11565 (OIY87_00910) - 2318940..2319257 (-) 318 WP_006531413.1 DUF1292 domain-containing protein -
  OIY87_RS11570 (OIY87_00915) ruvX 2319290..2319709 (-) 420 WP_269725029.1 Holliday junction resolvase RuvX -
  OIY87_RS11575 (OIY87_00920) - 2319706..2319975 (-) 270 WP_003066890.1 IreB family regulatory phosphoprotein -
  OIY87_RS11580 (OIY87_00925) spx 2320297..2320695 (-) 399 WP_009855164.1 transcriptional regulator Spx -
  OIY87_RS11585 (OIY87_00930) recA 2320965..2322119 (-) 1155 WP_009855165.1 recombinase RecA Machinery gene
  OIY87_RS11590 (OIY87_00935) cinA 2322169..2323428 (-) 1260 WP_269725030.1 competence/damage-inducible protein A Machinery gene
  OIY87_RS11595 (OIY87_00940) - 2323560..2324750 (-) 1191 WP_269725031.1 MFS transporter -
  OIY87_RS11600 (OIY87_00945) - 2324910..2325083 (-) 174 WP_269725032.1 hypothetical protein -
  OIY87_RS11605 (OIY87_00950) - 2325133..2325597 (-) 465 WP_077497924.1 hypothetical protein -
  OIY87_RS11610 (OIY87_00955) - 2325667..2326074 (-) 408 WP_077497926.1 hypothetical protein -
  OIY87_RS11615 (OIY87_00960) - 2326237..2327091 (+) 855 WP_269725033.1 helix-turn-helix domain-containing protein -
  OIY87_RS11620 (OIY87_00965) ruvA 2327165..2327758 (-) 594 WP_009855172.1 Holliday junction branch migration protein RuvA -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45505.84 Da        Isoelectric Point: 4.9032

>NTDB_id=763853 OIY87_RS11590 WP_269725030.1 2322169..2323428(-) (cinA) [Streptococcus gallolyticus strain XH2168]
MKAEIIAVGTEILTGQITNTNAQFLSEEFAKLGIDVFFQTAVGDNEERLLSVIDLASKRSELVVLCGGLGPTEDDLTKQT
LAKYLGRDLVFDEQANKRLDEFFATRPQFARTANNERQAQLIEGSIPLQNSTGLAVGGVLEVNDVTYVVLPGPPSELKPM
VLDSLVPLLSGDHKQLYSRVLRFFGIGESQLVTVLTDLIDNQTDPTIALYAKTGEVTLRLSTKADDVASAKAKLDALEHK
ILAKKTLNSIPLEQLFYGYGDDNSMARVVFDLLKEKHKTITAAESLTAGLFQSSIADFSGSSAVFNGGFVTYSIEEKSKM
LHIPLEDLQEHGVVSHFTAEKMAEQSRLLTDADFGIGLTGVAGPDSLEGHPAGTVFIGIATREKVHSIRVVIGGRSRSDV
RYIATLYAFNLVRQALLQG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=763853 OIY87_RS11590 WP_269725030.1 2322169..2323428(-) (cinA) [Streptococcus gallolyticus strain XH2168]
ATGAAAGCTGAAATCATTGCTGTGGGAACAGAAATTCTAACAGGACAAATCACAAATACAAATGCTCAATTTTTATCGGA
AGAATTTGCCAAGTTAGGAATTGATGTGTTCTTTCAAACAGCTGTTGGTGATAATGAAGAACGTCTTTTATCAGTTATTG
ATTTAGCAAGCAAGCGAAGTGAATTAGTTGTCTTATGTGGAGGGCTTGGTCCGACAGAAGACGATTTAACAAAACAAACG
TTAGCAAAATATTTGGGACGCGATTTAGTCTTTGATGAACAAGCTAACAAGCGTTTGGACGAATTTTTTGCGACACGTCC
GCAGTTTGCTAGAACGGCTAATAACGAACGTCAAGCACAGCTGATTGAAGGGTCAATACCGTTGCAAAATAGCACTGGTT
TGGCTGTTGGTGGCGTGCTAGAAGTAAATGACGTGACCTACGTTGTTCTCCCTGGACCGCCGAGTGAATTAAAACCAATG
GTATTGGATTCTCTAGTACCTTTATTGTCTGGAGACCATAAGCAGCTTTATTCACGTGTGTTGCGTTTCTTTGGGATTGG
TGAAAGCCAGTTAGTGACCGTTTTGACAGATTTGATTGATAATCAAACAGACCCAACGATTGCTCTGTATGCGAAAACAG
GTGAGGTGACCCTTCGTTTATCAACCAAGGCAGATGATGTGGCGTCAGCAAAAGCGAAATTGGATGCTCTAGAGCATAAA
ATTCTAGCCAAAAAAACATTAAATAGTATTCCTCTTGAACAGTTATTTTATGGCTATGGTGATGATAACAGTATGGCGCG
TGTTGTTTTTGATTTGTTGAAAGAAAAGCACAAAACCATTACAGCGGCAGAAAGTTTGACCGCAGGGCTATTCCAATCTA
GTATCGCTGATTTTTCAGGGTCATCTGCAGTATTTAATGGCGGATTTGTGACGTATAGTATAGAAGAAAAATCAAAAATG
CTTCACATTCCTCTTGAAGATTTGCAAGAACATGGTGTAGTAAGTCACTTTACAGCTGAAAAAATGGCAGAGCAATCACG
TTTATTGACAGATGCTGATTTTGGTATCGGTTTGACAGGTGTTGCAGGACCAGATAGCTTAGAAGGACATCCAGCAGGAA
CAGTTTTCATTGGTATTGCTACTAGAGAAAAAGTTCATTCTATTCGTGTTGTTATAGGTGGGCGAAGCCGTTCAGACGTC
CGTTATATTGCTACTTTATATGCTTTCAACTTAGTACGTCAAGCTTTATTACAAGGCTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-241)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(263-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

72.422

99.523

0.721
  cinA Streptococcus mitis SK321

70.813

99.761

0.706
  cinA Streptococcus mitis NCTC 12261

70.574

99.761

0.704
  cinA Streptococcus pneumoniae Rx1

69.617

99.761

0.695
  cinA Streptococcus pneumoniae TIGR4

69.617

99.761

0.695
  cinA Streptococcus pneumoniae R6

69.617

99.761

0.695
  cinA Streptococcus pneumoniae D39

69.378

99.761

0.692
  cinA Streptococcus suis isolate S10

53.606

99.284

0.532
  cinA Bacillus subtilis subsp. subtilis str. 168

45.972

100

0.463