Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OTS06_RS04180 Genome accession   NZ_CP113533
Coordinates   875735..876055 (-) Length   106 a.a.
NCBI ID   WP_106553298.1    Uniprot ID   -
Organism   Aeromonas hydrophila strain SHSK47     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 870735..881055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTS06_RS04160 - 871054..871731 (-) 678 WP_106553300.1 DnaT-like ssDNA-binding domain-containing protein -
  OTS06_RS04165 - 872072..873043 (+) 972 WP_106553299.1 response regulator -
  OTS06_RS04170 - 873117..874514 (-) 1398 WP_011707249.1 peptide MFS transporter -
  OTS06_RS04175 galU 874728..875639 (-) 912 WP_043119374.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OTS06_RS04180 comEA 875735..876055 (-) 321 WP_106553298.1 ComEA family DNA-binding protein Machinery gene
  OTS06_RS04185 cysQ 876223..876993 (+) 771 WP_180345424.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OTS06_RS04190 - 877074..877370 (-) 297 WP_005309589.1 YciI family protein -
  OTS06_RS04195 - 877396..877947 (-) 552 WP_024946223.1 septation protein A -
  OTS06_RS04200 - 878052..879557 (-) 1506 WP_106553296.1 aminotransferase class V-fold PLP-dependent enzyme -
  OTS06_RS04205 - 879782..880417 (+) 636 WP_106553295.1 hemolysin III family protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11226.05 Da        Isoelectric Point: 9.5773

>NTDB_id=762809 OTS06_RS04180 WP_106553298.1 875735..876055(-) (comEA) [Aeromonas hydrophila strain SHSK47]
MNYKTLTATLLLSCLPLLSQPLQAADKPVAKPATTVTAAKESGKVNLNTASINELTALKGIGEKKAQAIVDYREKQGKFT
TVDQLADVSGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=762809 OTS06_RS04180 WP_106553298.1 875735..876055(-) (comEA) [Aeromonas hydrophila strain SHSK47]
ATGAACTACAAGACCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCCCTGCTCAGCCAACCTCTGCAGGCCGCCGACAA
GCCTGTTGCCAAGCCGGCAACCACGGTCACCGCCGCCAAGGAGAGCGGCAAGGTGAACCTCAACACCGCCAGTATCAATG
AGTTGACTGCGCTCAAGGGCATTGGCGAGAAAAAGGCCCAGGCCATCGTCGATTACCGCGAGAAGCAGGGCAAGTTCACT
ACCGTGGATCAGCTGGCCGATGTGAGTGGCATCGGGCCAGCCACGCTGGAAGCAAATCGGGACATGATTATCGTCAAGTA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

52.727

100

0.547
  comEA Vibrio cholerae strain A1552

52.727

100

0.547
  comE1/comEA Haemophilus influenzae Rd KW20

43.243

100

0.453
  comEA/comE1 Glaesserella parasuis strain SC1401

53.75

75.472

0.406
  comEA Vibrio campbellii strain DS40M4

41

94.34

0.387
  comEA/celA/cilE Streptococcus mitis NCTC 12261

51.316

71.698

0.368
  comEA Legionella pneumophila str. Paris

39.394

93.396

0.368
  comEA Legionella pneumophila strain ERS1305867

39.394

93.396

0.368
  comEA Acinetobacter baylyi ADP1

45.882

80.189

0.368