Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OV592_RS18075 Genome accession   NZ_CP113525
Coordinates   3934866..3936116 (+) Length   416 a.a.
NCBI ID   WP_406609555.1    Uniprot ID   -
Organism   Agarivorans sp. JK6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3929866..3941116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OV592_RS18050 ampE 3929900..3930754 (-) 855 WP_406609550.1 beta-lactamase regulator AmpE -
  OV592_RS18055 ampD 3930829..3931365 (-) 537 WP_406609551.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  OV592_RS18060 nadC 3931540..3932379 (+) 840 WP_406609552.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OV592_RS18065 - 3932633..3933073 (+) 441 WP_406609553.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OV592_RS18070 pilB 3933078..3934778 (+) 1701 WP_406609554.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OV592_RS18075 pilC 3934866..3936116 (+) 1251 WP_406609555.1 type II secretion system F family protein Machinery gene
  OV592_RS18080 pilD 3936119..3937000 (+) 882 WP_406609556.1 prepilin peptidase Machinery gene
  OV592_RS18085 coaE 3936997..3937599 (+) 603 WP_406609557.1 dephospho-CoA kinase -
  OV592_RS18090 zapD 3937658..3938398 (+) 741 WP_406609558.1 cell division protein ZapD -
  OV592_RS18095 yacG 3938398..3938598 (+) 201 WP_406609559.1 DNA gyrase inhibitor YacG -
  OV592_RS18100 mutT 3938601..3939005 (-) 405 WP_406609560.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45557.44 Da        Isoelectric Point: 9.3584

>NTDB_id=762754 OV592_RS18075 WP_406609555.1 3934866..3936116(+) (pilC) [Agarivorans sp. JK6]
MATASTTSKRKIEVKKINAYTWSGVNRKGAKVSGEYQAESISQVKAELKRQGITVTKIRKKTESFLSKMGNKIQPMDIAV
VSRQIATMLQAGVPLVQSFNIISKSVEKPAMRELIGEIAAEVESGTALSETLRKHPLYFDQLYCDLIEAGEQSGALETIY
DRVAIYKEKAEALKSKIKKAMFYPVSVIIVAIIVTTILLLFVIPQFEEIFAGFGAELPAFTQFVIGISRFLQDYWPYIFG
GIFALGYGYVQAFRRSQAVKDATDRFILKIPVINPILHKAAMARFARTLSTTFAAGIPLIDALKSASGASGNVVYRNAVD
AIRIEVTGGMQMNVAMRTVDLFPDMVTQMVMIGEESGSLDSMLDKVANIYEQQVDDAVDGLTSLIEPLIMAVLGVLVGGM
VIAMYLPIFKLGSVVS

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=762754 OV592_RS18075 WP_406609555.1 3934866..3936116(+) (pilC) [Agarivorans sp. JK6]
ATGGCTACCGCAAGTACTACCAGCAAACGAAAAATTGAAGTTAAAAAAATAAATGCTTACACCTGGAGTGGAGTTAACCG
CAAAGGCGCTAAAGTTAGCGGCGAGTATCAAGCGGAAAGCATTAGCCAAGTTAAAGCAGAGCTAAAACGCCAAGGCATTA
CGGTTACCAAAATTAGAAAGAAAACTGAAAGCTTTCTTTCTAAAATGGGCAACAAAATCCAGCCCATGGACATTGCCGTG
GTATCTCGGCAAATTGCCACCATGCTTCAGGCTGGCGTACCCTTAGTTCAAAGTTTCAACATCATATCCAAAAGCGTAGA
AAAGCCTGCCATGCGCGAGCTAATTGGCGAAATTGCCGCCGAAGTTGAATCCGGCACTGCACTATCTGAAACGCTACGCA
AACACCCTTTGTATTTTGATCAACTTTACTGCGATTTAATTGAAGCGGGTGAGCAAAGTGGTGCTTTAGAAACCATTTAT
GACCGTGTAGCAATATACAAAGAAAAAGCAGAGGCGCTGAAATCAAAAATTAAAAAAGCCATGTTCTACCCAGTTTCGGT
GATCATTGTAGCCATTATCGTTACTACTATTCTGCTGTTATTTGTGATTCCTCAGTTCGAAGAAATTTTTGCAGGCTTTG
GTGCGGAGTTACCTGCCTTCACCCAGTTTGTAATTGGTATATCACGCTTCTTACAAGATTATTGGCCCTATATTTTTGGT
GGCATATTCGCGCTTGGTTATGGCTATGTGCAAGCCTTTCGGCGCTCCCAAGCGGTAAAGGATGCTACCGATAGATTTAT
TCTTAAGATTCCAGTGATTAATCCTATTTTGCATAAAGCAGCAATGGCACGCTTTGCTCGCACCTTGTCCACTACCTTTG
CAGCCGGTATCCCACTGATTGATGCCTTAAAGTCAGCCTCTGGTGCATCAGGTAACGTAGTCTATCGAAATGCCGTAGAT
GCGATTAGAATTGAGGTTACTGGCGGTATGCAAATGAACGTGGCCATGCGTACTGTGGATTTATTTCCAGACATGGTGAC
GCAAATGGTGATGATTGGTGAGGAGTCCGGTTCACTTGATAGCATGTTAGATAAGGTGGCCAACATTTATGAACAACAGG
TTGATGATGCAGTCGACGGCTTAACCAGTTTAATTGAGCCTCTAATTATGGCTGTGCTTGGTGTGCTAGTTGGTGGTATG
GTGATCGCCATGTACTTACCTATCTTTAAACTCGGATCAGTTGTTAGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(285-407)

Type II secretion system (T2SS), protein F (T2SSF)

(82-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.25

96.154

0.55
  pilC Acinetobacter baylyi ADP1

54.66

95.433

0.522
  pilC Acinetobacter baumannii D1279779

54.66

95.433

0.522
  pilC Legionella pneumophila strain ERS1305867

52.778

95.192

0.502
  pilC Vibrio cholerae strain A1552

45.113

95.913

0.433
  pilC Vibrio campbellii strain DS40M4

44.25

96.154

0.425
  pilG Neisseria gonorrhoeae MS11

42.963

97.356

0.418
  pilG Neisseria meningitidis 44/76-A

42.963

97.356

0.418