Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NM686_RS21245 Genome accession   NZ_CP113517
Coordinates   4495901..4497124 (-) Length   407 a.a.
NCBI ID   WP_255189804.1    Uniprot ID   -
Organism   Methylomonas rapida strain MP1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4490901..4502124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM686_RS21210 (NM686_021210) - 4490922..4491197 (+) 276 WP_255189797.1 sulfurtransferase TusA family protein -
  NM686_RS21215 (NM686_021215) argJ 4491221..4492435 (+) 1215 WP_255189798.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  NM686_RS21220 (NM686_021220) - 4492436..4493368 (+) 933 WP_255189799.1 Nudix family hydrolase -
  NM686_RS21225 (NM686_021225) yacG 4493365..4493577 (-) 213 WP_255189800.1 DNA gyrase inhibitor YacG -
  NM686_RS21230 (NM686_021230) zapD 4493577..4494347 (-) 771 WP_255189801.1 cell division protein ZapD -
  NM686_RS21235 (NM686_021235) coaE 4494344..4494955 (-) 612 WP_255189802.1 dephospho-CoA kinase -
  NM686_RS21240 (NM686_021240) pilD 4494959..4495825 (-) 867 WP_255189803.1 A24 family peptidase Machinery gene
  NM686_RS21245 (NM686_021245) pilC 4495901..4497124 (-) 1224 WP_255189804.1 type II secretion system F family protein Machinery gene
  NM686_RS21250 (NM686_021250) pilB 4497128..4498837 (-) 1710 WP_255189805.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NM686_RS21255 (NM686_021255) - 4498928..4499725 (-) 798 WP_255189806.1 response regulator -
  NM686_RS21260 (NM686_021260) - 4499729..4501171 (-) 1443 WP_255189807.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44428.32 Da        Isoelectric Point: 5.5635

>NTDB_id=762660 NM686_RS21245 WP_255189804.1 4495901..4497124(-) (pilC) [Methylomonas rapida strain MP1]
MAKPQEDQIDFLWEGVDKQAKKTNGLISAKSEAIARSELRKMGIRVVKIKPKPKPLFGAKVQKITTGDIAVFARQLATML
EAGVPLVQSFDIIGKGHDNASMSEMLLAIKADIEGGDTLAQALGKRPLYFDDLFCNLVNAGEQAGVLEGLLDKIATYKEK
TESIKKKVKKALTYPIAVLVVAFIVTAILLIFVVPVFEELFQSFGADLPAFTKFVIGLSEWVQEWWWAVVGVIGVTIYTF
SYFQKRSRPFNHFLDRTLLKIPVVGMILEKSAIARFARTLSTMSAAGVPLVEALASVAGACGNIIFYDGVMKMRDDVATG
QQLQFSMTQTGLFPNMVIQMVAIGEESGSIDSMLDKVADFFEEEVDNLVDNLSSLMEPIIMAILGVLVGGLIVAMYLPIF
KLGAAVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=762660 NM686_RS21245 WP_255189804.1 4495901..4497124(-) (pilC) [Methylomonas rapida strain MP1]
ATGGCTAAACCACAAGAAGATCAAATCGATTTCCTCTGGGAAGGAGTCGATAAGCAGGCCAAAAAAACCAACGGCCTCAT
CAGCGCCAAGAGCGAGGCTATTGCCCGTAGCGAGCTACGAAAGATGGGCATCCGGGTGGTCAAGATCAAGCCCAAACCCA
AGCCCTTGTTTGGCGCCAAAGTGCAAAAGATCACGACCGGCGACATCGCGGTATTCGCTCGGCAATTGGCCACCATGCTG
GAGGCCGGCGTGCCCTTGGTGCAGTCTTTCGACATCATAGGCAAGGGACACGACAACGCCAGCATGTCCGAGATGTTGCT
GGCGATCAAGGCCGACATCGAAGGTGGCGATACCCTGGCGCAAGCCTTGGGCAAGCGGCCGCTTTACTTTGACGACTTGT
TCTGTAACTTGGTCAACGCGGGCGAGCAAGCCGGCGTACTGGAAGGCTTGCTGGACAAGATCGCCACCTACAAGGAAAAA
ACAGAATCCATCAAGAAAAAAGTCAAAAAAGCCCTCACCTACCCGATTGCGGTGCTGGTGGTAGCCTTTATCGTCACGGC
CATTTTGTTGATTTTTGTGGTGCCGGTATTCGAGGAGTTATTCCAAAGTTTCGGCGCCGATTTGCCAGCGTTCACCAAAT
TCGTCATTGGTCTTTCGGAATGGGTACAGGAATGGTGGTGGGCCGTAGTCGGTGTCATCGGCGTTACCATCTATACCTTC
AGTTATTTCCAAAAGCGCTCGCGCCCGTTCAATCATTTTCTGGATCGAACCTTATTAAAAATTCCCGTGGTCGGCATGAT
TCTGGAAAAATCCGCGATCGCGCGTTTCGCCCGGACGCTGTCCACGATGTCAGCGGCGGGCGTACCCTTGGTCGAGGCAT
TGGCATCCGTAGCGGGCGCCTGCGGCAATATCATTTTCTACGATGGCGTCATGAAAATGCGTGACGATGTCGCTACCGGT
CAACAATTGCAATTTTCGATGACGCAAACCGGCCTGTTTCCCAACATGGTGATTCAAATGGTCGCTATCGGCGAAGAATC
GGGTTCTATCGACAGCATGCTGGACAAGGTGGCCGATTTTTTTGAAGAGGAAGTGGATAACCTGGTCGACAACCTCAGCA
GCTTGATGGAACCCATCATCATGGCCATCCTGGGGGTGCTGGTGGGCGGCCTGATCGTCGCGATGTATTTGCCTATCTTC
AAACTGGGCGCGGCAGTCGGGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

60.837

99.754

0.607
  pilC Pseudomonas stutzeri DSM 10701

58.186

97.543

0.568
  pilC Acinetobacter baumannii D1279779

55.919

97.543

0.545
  pilC Acinetobacter baylyi ADP1

53.904

97.543

0.526
  pilG Neisseria meningitidis 44/76-A

47.75

98.28

0.469
  pilG Neisseria gonorrhoeae MS11

47.5

98.28

0.467
  pilC Vibrio cholerae strain A1552

40.704

97.789

0.398
  pilC Vibrio campbellii strain DS40M4

39.348

98.034

0.386