Detailed information NTG0762659

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NM686_RS21240
• Genome accession: NZ_CP113517
• Coordinates: 4494959..4495825 (-)
• Length: 288 a.a.
• NCBI ID: WP_255189803.1
• Uniprot ID: -
• Organism: Methylomonas rapida strain MP1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4489959..4500825

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NM686_RS21210 (NM686_021210)	-	4490922..4491197 (+)	276	WP_255189797.1	sulfurtransferase TusA family protein	-
NM686_RS21215 (NM686_021215)	argJ	4491221..4492435 (+)	1215	WP_255189798.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
NM686_RS21220 (NM686_021220)	-	4492436..4493368 (+)	933	WP_255189799.1	Nudix family hydrolase	-
NM686_RS21225 (NM686_021225)	yacG	4493365..4493577 (-)	213	WP_255189800.1	DNA gyrase inhibitor YacG	-
NM686_RS21230 (NM686_021230)	zapD	4493577..4494347 (-)	771	WP_255189801.1	cell division protein ZapD	-
NM686_RS21235 (NM686_021235)	coaE	4494344..4494955 (-)	612	WP_255189802.1	dephospho-CoA kinase	-
NM686_RS21240 (NM686_021240)	pilD	4494959..4495825 (-)	867	WP_255189803.1	A24 family peptidase	Machinery gene
NM686_RS21245 (NM686_021245)	pilC	4495901..4497124 (-)	1224	WP_255189804.1	type II secretion system F family protein	Machinery gene
NM686_RS21250 (NM686_021250)	pilB	4497128..4498837 (-)	1710	WP_255189805.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NM686_RS21255 (NM686_021255)	-	4498928..4499725 (-)	798	WP_255189806.1	response regulator	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32113.29 Da
• Isoelectric Point: 6.9204

>NTDB_id=762659 NM686_RS21240 WP_255189803.1 4494959..4495825(-) (pilD) [Methylomonas rapida strain MP1]
MLLTILQQSPAFLIGLIFVLGLLVGSFLNVVIYRLPVMMQRGWRRDCLEYLELPAEEQTEAFNLLWPGSRCPVCKTEIKP
YQNIPVFSYLWLRGKCAQCATPISPRYPLIEAFTAICSALVAWHFGYGLALLFGLVLTWSLIALSFIDIDHQLLPDSITL
PMLWLGLFLSLFSIYTDSHASIVGAVAGYLSLWSVYHLFKLLTGKEGMGYGDFKLLAMLGAWMGWHYLPLIIILSSLVGA
VIGIAMIVFRRCDAGQPIPFGPYLATAGWLALIWGDAINRLYLDSVGL

Nucleotide

• Length: 867 bp

>NTDB_id=762659 NM686_RS21240 WP_255189803.1 4494959..4495825(-) (pilD) [Methylomonas rapida strain MP1]
ATGCTACTGACTATCCTCCAGCAATCACCTGCTTTTTTGATCGGTTTGATCTTCGTATTGGGGCTGTTGGTCGGCAGCTT
CTTGAATGTAGTCATTTACCGGTTACCGGTCATGATGCAGCGCGGCTGGCGCCGCGATTGTCTGGAGTATCTGGAATTGC
CGGCGGAAGAACAGACGGAAGCCTTTAATTTGCTGTGGCCTGGATCGCGTTGCCCGGTTTGCAAAACCGAGATCAAACCC
TATCAAAACATTCCGGTATTCAGTTATTTGTGGCTGCGCGGAAAATGCGCGCAGTGCGCCACCCCGATTTCTCCGCGCTA
TCCGCTGATCGAAGCCTTTACCGCGATATGCTCGGCATTGGTGGCCTGGCATTTCGGTTATGGACTGGCTCTGCTGTTCG
GTTTGGTATTGACGTGGAGCCTTATCGCGTTGAGCTTCATCGACATCGATCATCAATTGTTGCCGGATTCCATCACGTTG
CCGATGCTCTGGCTGGGCTTGTTTCTGAGCCTGTTTTCCATTTATACGGACAGCCATGCTAGCATCGTTGGCGCCGTGGC
CGGTTATTTGAGTCTTTGGAGCGTCTATCATCTGTTTAAGCTGCTGACCGGCAAGGAGGGCATGGGTTATGGCGATTTCA
AATTGCTGGCCATGCTCGGCGCCTGGATGGGCTGGCATTACCTGCCGTTGATCATTATCTTGTCATCCTTGGTTGGCGCG
GTGATCGGTATCGCGATGATCGTATTCAGGCGGTGCGATGCCGGCCAGCCGATTCCATTTGGCCCTTATTTGGCAACTGC
GGGTTGGCTGGCGCTGATCTGGGGCGACGCCATCAATCGTCTGTACTTGGATAGTGTTGGGCTGTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	55.805	92.708	0.517
pilD	Acinetobacter nosocomialis M2	55.431	92.708	0.514
pilD	Vibrio campbellii strain DS40M4	51.748	99.306	0.514
pilD	Vibrio cholerae strain A1552	52.747	94.792	0.5
pilD	Neisseria gonorrhoeae MS11	52.222	93.75	0.49