Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   OPT59_RS10950 Genome accession   NZ_CP125360
Coordinates   2215887..2216483 (-) Length   198 a.a.
NCBI ID   WP_015017499.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain UT_120444     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2210887..2221483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPT59_RS10915 (OPT59_10915) - 2210931..2211236 (-) 306 WP_003058733.1 DUF1292 domain-containing protein -
  OPT59_RS10920 (OPT59_10920) ruvX 2211247..2211666 (-) 420 WP_003053103.1 Holliday junction resolvase RuvX -
  OPT59_RS10925 (OPT59_10925) - 2211663..2211932 (-) 270 WP_003045720.1 IreB family regulatory phosphoprotein -
  OPT59_RS10930 (OPT59_10930) spx 2212044..2212442 (-) 399 WP_003053105.1 transcriptional regulator Spx -
  OPT59_RS10935 (OPT59_10935) recA 2212736..2213872 (-) 1137 WP_003058758.1 recombinase RecA Machinery gene
  OPT59_RS10940 (OPT59_10940) cinA 2213977..2215248 (-) 1272 WP_003058772.1 competence/damage-inducible protein A Machinery gene
  OPT59_RS10945 (OPT59_10945) - 2215317..2215877 (-) 561 WP_011018314.1 DNA-3-methyladenine glycosylase I -
  OPT59_RS10950 (OPT59_10950) ruvA 2215887..2216483 (-) 597 WP_015017499.1 Holliday junction branch migration protein RuvA Machinery gene
  OPT59_RS10955 (OPT59_10955) - 2216485..2217705 (-) 1221 WP_003058727.1 MFS transporter -
  OPT59_RS10960 (OPT59_10960) hexB 2217716..2219698 (-) 1983 WP_003060855.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21825.13 Da        Isoelectric Point: 6.7330

>NTDB_id=762548 OPT59_RS10950 WP_015017499.1 2215887..2216483(-) (ruvA) [Streptococcus dysgalactiae subsp. equisimilis strain UT_120444]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKTAQQMVLDLAGKFVEVPQETGNTKARSNKAGNTQLDEAIEAL
LALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=762548 OPT59_RS10950 WP_015017499.1 2215887..2216483(-) (ruvA) [Streptococcus dysgalactiae subsp. equisimilis strain UT_120444]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACAAATGGACTAGGCTATAT
TATCAATGTAGCAAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTACCTGCATCAAGTGATTCGTG
AGGATGCTCACTTGTTGTTTGGGTTTCATACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGCATT
GGTCCGACAACAGCTCTCGCTATTGTGGCAGTTGATGATAATCAGGGGCTTGTTAATGCCATTGATACCAGTGACATCAA
ATACTTGACTAAATTTCCTAAAATCGGGAAAAAAACGGCACAACAGATGGTTCTTGACTTAGCCGGAAAATTTGTGGAGG
TTCCACAAGAGACTGGTAATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAGGCAACGGAATTGAAGAAAATTCGTGCCTTCTTTGAAGGAACCTCTGAAACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

68.02

99.495

0.677
  ruvA Streptococcus pneumoniae R6

68.02

99.495

0.677
  ruvA Streptococcus pneumoniae D39

68.02

99.495

0.677
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.424