Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OUY36_RS05060 Genome accession   NZ_CP113258
Coordinates   1084951..1086171 (+) Length   406 a.a.
NCBI ID   WP_063544459.1    Uniprot ID   -
Organism   Stutzerimonas sp. R40042     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1080139..1094997 1084951..1086171 within 0


Gene organization within MGE regions


Location: 1080139..1094997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OUY36_RS05035 (OUY36_05035) - 1080139..1080975 (-) 837 WP_267937006.1 hypothetical protein -
  OUY36_RS05040 (OUY36_05040) - 1080977..1081786 (-) 810 WP_267937007.1 ABC transporter permease subunit -
  OUY36_RS05045 (OUY36_05045) - 1082207..1082662 (-) 456 WP_267937008.1 hypothetical protein -
  OUY36_RS21985 - 1082692..1082877 (-) 186 WP_272890827.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OUY36_RS05055 (OUY36_05055) pilB 1083245..1084948 (+) 1704 WP_267937009.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OUY36_RS05060 (OUY36_05060) pilC 1084951..1086171 (+) 1221 WP_063544459.1 type II secretion system F family protein Machinery gene
  OUY36_RS05065 (OUY36_05065) pilD 1086175..1087041 (+) 867 WP_267937010.1 A24 family peptidase Machinery gene
  OUY36_RS05070 (OUY36_05070) coaE 1087174..1087782 (+) 609 WP_267937011.1 dephospho-CoA kinase -
  OUY36_RS05075 (OUY36_05075) yacG 1087779..1087976 (+) 198 WP_102840588.1 DNA gyrase inhibitor YacG -
  OUY36_RS05080 (OUY36_05080) - 1088001..1088681 (-) 681 WP_102840589.1 energy-coupling factor ABC transporter permease -
  OUY36_RS05085 (OUY36_05085) - 1088720..1089757 (-) 1038 WP_267937013.1 NADP(H)-dependent aldo-keto reductase -
  OUY36_RS05090 (OUY36_05090) rplM 1090199..1090627 (+) 429 WP_063544471.1 50S ribosomal protein L13 -
  OUY36_RS05095 (OUY36_05095) rpsI 1090642..1091034 (+) 393 WP_013981948.1 30S ribosomal protein S9 -
  OUY36_RS05100 (OUY36_05100) petA 1091289..1091882 (+) 594 WP_156244357.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -
  OUY36_RS05105 (OUY36_05105) - 1091882..1093093 (+) 1212 WP_110777978.1 cytochrome bc complex cytochrome b subunit -
  OUY36_RS05110 (OUY36_05110) - 1093093..1093872 (+) 780 WP_267937018.1 cytochrome c1 -
  OUY36_RS05115 (OUY36_05115) - 1093961..1094578 (+) 618 WP_110777975.1 glutathione S-transferase N-terminal domain-containing protein -
  OUY36_RS05120 (OUY36_05120) - 1094593..1094997 (+) 405 WP_267937020.1 ClpXP protease specificity-enhancing factor -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44565.56 Da        Isoelectric Point: 9.8649

>NTDB_id=761337 OUY36_RS05060 WP_063544459.1 1084951..1086171(+) (pilC) [Stutzerimonas sp. R40042]
MAEKALKTSVFTWEGTDRKGGKVKGELAGQSPALIKAQLRKQGINPLKVRKKAVSLFGAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDEIKQEVAAGNSFAGSLRKKPQYFDDLYCNLVESGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAIIVSAILLIKVVPQFESVFQGFGAELPAFTMMVVQLSRWLQEWWYIVFFALFIAAFLFK
HAYKRSEKFRDSLDRLLLKLPIVGDILYKSVVARYARTLSTTFAAGVPLVDALDSVAGATGNVVFRNAVAKIRTDVSSGV
QLNFSMRTTGIFPTMAIQMTAIGEESGALDEMLDKLASFYEAEVDNMVDNLTTLMEPLIMAVLGVLVGGLIIAMYLPIFQ
LGSVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=761337 OUY36_RS05060 WP_063544459.1 1084951..1086171(+) (pilC) [Stutzerimonas sp. R40042]
ATGGCGGAAAAAGCGTTGAAAACCAGTGTGTTCACCTGGGAAGGCACCGACAGAAAAGGTGGCAAGGTCAAGGGGGAGCT
GGCAGGCCAGAGCCCGGCACTGATCAAGGCGCAGCTCCGCAAGCAGGGTATCAATCCGCTGAAGGTTCGCAAGAAGGCTG
TTTCCTTGTTCGGGGCGGGCAAGAAAATCAAGCCGATGGACATCGCACTGTTCACTCGGCAAATGGCCACCATGATGAAG
GCGGGCGTGCCGCTGCTGCAATCGTTCGACATCATCGGCGAGGGCTTCGATAACCCAAACATGCGCAAGCTGGTCGATGA
GATCAAGCAAGAAGTGGCGGCAGGCAATAGCTTTGCTGGCTCGCTGCGTAAGAAGCCGCAATATTTCGATGACCTGTATT
GCAATTTGGTCGAGTCTGGAGAGCAGTCCGGTGCGCTCGAAACGCTGCTGGACCGTGTTGCAACCTACAAGGAAAAAACC
GAGGCGCTGAAGGCCAAGATCAAGAAGGCCATGACCTATCCGATTGCGGTTATCGTGGTGGCGATCATCGTATCTGCGAT
TCTCTTGATTAAGGTAGTTCCGCAGTTCGAGAGCGTATTCCAAGGCTTCGGTGCGGAACTTCCAGCGTTTACCATGATGG
TGGTGCAGTTGTCACGTTGGCTGCAGGAGTGGTGGTACATCGTATTCTTTGCGTTGTTCATTGCCGCCTTTTTGTTCAAG
CATGCATATAAACGGTCGGAAAAGTTTCGTGACTCTCTTGATCGCCTTTTGCTCAAGCTGCCGATCGTTGGTGACATTCT
CTACAAGTCTGTAGTTGCGCGATATGCTCGCACATTGTCCACGACATTCGCGGCTGGTGTGCCCTTGGTTGATGCGTTGG
ACTCGGTGGCAGGTGCCACGGGCAACGTCGTGTTCCGCAATGCAGTAGCGAAAATCCGTACGGACGTATCGTCTGGTGTG
CAGCTCAATTTCTCCATGCGCACGACCGGCATTTTTCCCACCATGGCTATTCAAATGACCGCTATCGGCGAAGAGTCCGG
TGCGTTGGACGAGATGCTCGACAAACTGGCCAGTTTCTATGAGGCGGAGGTCGACAACATGGTGGATAACCTTACTACCC
TGATGGAACCGCTGATCATGGCCGTGCTCGGGGTTCTGGTCGGTGGCTTGATCATCGCGATGTATCTGCCGATCTTCCAG
TTGGGTAGTGTGGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

82.469

99.754

0.823
  pilC Acinetobacter baylyi ADP1

63.547

100

0.635
  pilC Acinetobacter baumannii D1279779

62.469

99.754

0.623
  pilC Legionella pneumophila strain ERS1305867

54.545

97.537

0.532
  pilG Neisseria gonorrhoeae MS11

45.522

99.015

0.451
  pilG Neisseria meningitidis 44/76-A

45.522

99.015

0.451
  pilC Vibrio cholerae strain A1552

43.35

100

0.434
  pilC Vibrio campbellii strain DS40M4

41

98.522

0.404