Detailed information    

insolico Bioinformatically predicted

Overview


Name   tsaP   Type   Machinery gene
Locus tag   OSH14_RS00925 Genome accession   NZ_CP113071
Coordinates   194390..195544 (-) Length   384 a.a.
NCBI ID   WP_168727008.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A118 DeltaH0N27_10830::kan     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 189390..200544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH14_RS00905 (OSH14_00905) - 190551..191201 (+) 651 WP_086227614.1 TetR/AcrR family transcriptional regulator -
  OSH14_RS00910 (OSH14_00910) - 191307..192227 (+) 921 WP_001994180.1 DMT family transporter -
  OSH14_RS00915 (OSH14_00915) - 192619..193188 (-) 570 WP_098715214.1 Sua5/YciO/YrdC/YwlC family protein -
  OSH14_RS00920 (OSH14_00920) dprA 193239..194369 (-) 1131 WP_168727007.1 DNA-processing protein DprA Machinery gene
  OSH14_RS00925 (OSH14_00925) tsaP 194390..195544 (-) 1155 WP_168727008.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  OSH14_RS00930 (OSH14_00930) def 195667..196197 (+) 531 WP_001196539.1 peptide deformylase -
  OSH14_RS00935 (OSH14_00935) - 196234..196662 (+) 429 WP_168727009.1 DUF2946 family protein -
  OSH14_RS00940 (OSH14_00940) - 196734..198848 (+) 2115 WP_168727010.1 TonB-dependent copper receptor -
  OSH14_RS00945 (OSH14_00945) - 198902..199108 (+) 207 WP_000182542.1 hypothetical protein -
  OSH14_RS00950 (OSH14_00950) - 199178..200392 (-) 1215 WP_168727011.1 oxygenase MpaB family protein -

Sequence


Protein


Download         Length: 384 a.a.        Molecular weight: 42323.21 Da        Isoelectric Point: 8.2461

>NTDB_id=759751 OSH14_RS00925 WP_168727008.1 194390..195544(-) (tsaP) [Acinetobacter baumannii strain A118 DeltaH0N27_10830::kan]
MKKVFDGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYVVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGVQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=759751 OSH14_RS00925 WP_168727008.1 194390..195544(-) (tsaP) [Acinetobacter baumannii strain A118 DeltaH0N27_10830::kan]
ATGAAAAAGGTTTTTGACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCTTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTGAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGTGACGGCTGTGTCGGTATTATCCGTCGCTATACAGGTCAAACCACAAACC
TGCAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATGTTGTTGGTACCGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACCATTTACGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCCGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAACTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACACTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACCCAGGGCGTTCAAGTAGGCCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains


Predicted by InterproScan.

(57-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

98.698

100

0.987