Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ORY89_RS07400 Genome accession   NZ_CP111148
Coordinates   1462402..1463646 (+) Length   414 a.a.
NCBI ID   WP_061108568.1    Uniprot ID   -
Organism   Listeria monocytogenes strain 16-02236     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1457402..1468646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORY89_RS07380 (ORY89_07380) - 1458576..1459862 (+) 1287 WP_061108569.1 pitrilysin family protein -
  ORY89_RS07385 (ORY89_07385) - 1459954..1460685 (+) 732 WP_003727459.1 SDR family oxidoreductase -
  ORY89_RS07390 (ORY89_07390) - 1460736..1461665 (+) 930 WP_003727458.1 RodZ family helix-turn-helix domain-containing protein -
  ORY89_RS07395 (ORY89_07395) pgsA 1461756..1462334 (+) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ORY89_RS07400 (ORY89_07400) cinA 1462402..1463646 (+) 1245 WP_061108568.1 competence/damage-inducible protein A Machinery gene
  ORY89_RS07405 (ORY89_07405) recA 1463920..1464966 (+) 1047 WP_003725961.1 recombinase RecA Machinery gene
  ORY89_RS07410 (ORY89_07410) rny 1465267..1466829 (+) 1563 WP_003721904.1 ribonuclease Y -
  ORY89_RS07415 (ORY89_07415) - 1466944..1467441 (+) 498 WP_009918755.1 GNAT family N-acetyltransferase -
  ORY89_RS07420 (ORY89_07420) - 1467447..1468250 (+) 804 WP_003721906.1 TIGR00282 family metallophosphoesterase -
  ORY89_RS07425 (ORY89_07425) - 1468267..1468629 (+) 363 WP_003744056.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45697.85 Da        Isoelectric Point: 4.6592

>NTDB_id=758234 ORY89_RS07400 WP_061108568.1 1462402..1463646(+) (cinA) [Listeria monocytogenes strain 16-02236]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNSTRLKEVIEIAENRSDILIFTGGLGPTEDDITKQ
ILAAHLQKQLVEDEYHMNKINEYFTSRNRTMTENNKLQAVIIEDSIVLNNDFGFAAGMYLRENNHTYVLLPGPPSEMKPM
FTSYANPLLLSESGDQNILESKIMRFFGIGESQLAADLNDLIVTQVNPTIATYAGDNEVVVRITATAKTKEEASRLVKET
EEEILRREGTFLYGYGEVSLSELVTAMLLEKELTISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGYETEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDAN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=758234 ORY89_RS07400 WP_061108568.1 1462402..1463646(+) (cinA) [Listeria monocytogenes strain 16-02236]
ATGGCAAGTGCAGAAATCATTGCAGTAGGAACAGAACTATTACTAGGGCAAATTGTTAATTCTAATGCTGCGTTTATTTC
ACAAGAATTAGCTGCTGACGGAATATATGTATATCATCATACGGTAGTTGGAGATAACTCAACACGTTTAAAAGAAGTAA
TCGAAATCGCTGAAAACCGAAGTGACATTTTAATCTTTACCGGCGGACTTGGACCGACTGAGGATGATATTACAAAACAA
ATCTTGGCTGCTCATCTACAAAAGCAATTAGTGGAAGATGAATACCATATGAATAAAATTAATGAGTATTTCACTTCTAG
GAATAGGACTATGACCGAAAATAATAAATTACAAGCGGTTATTATTGAAGATTCCATCGTATTAAATAATGATTTTGGCT
TTGCGGCTGGAATGTACTTAAGAGAAAACAATCATACTTACGTTTTGCTACCAGGTCCACCATCTGAAATGAAACCAATG
TTTACAAGCTATGCTAACCCATTACTTTTAAGCGAAAGTGGCGATCAAAACATTTTAGAATCCAAAATTATGCGCTTTTT
TGGAATTGGAGAGTCACAATTAGCTGCTGATTTAAATGATTTGATTGTCACGCAAGTCAACCCGACGATTGCGACATATG
CTGGTGATAATGAAGTTGTGGTCCGTATCACAGCGACAGCTAAAACAAAAGAAGAAGCAAGCAGACTTGTGAAGGAAACC
GAGGAAGAAATATTGCGCCGAGAAGGTACCTTTTTATATGGATATGGAGAGGTGTCATTGTCTGAATTAGTAACGGCGAT
GTTACTTGAAAAAGAACTTACCATCTCTGCCGCAGAAAGTTTCACTGCTGGTTTGTTCCAAGCAGAAATTGCCCGCTTTC
CTGGCATTTCGAAAATTTTCAAAGGTGGTATGGTGACATACAGTGAAGAAACAAAACAATCTATATTACAAGTATCTCCC
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCGGAATGTGCGAAGGAAATGGCTGAAAATGTAAGCCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGTCCAGATAGTTTAGAAGGTCATCCTGCTGGCACTATTTGGATTGGAC
TAAGCGTTAAAGGTTATGAAACAGAGGCTTTTCAGTTTGTCTATGGAAGAGATCGAAACCATAATCGCCGCCGTGCAGTA
AAACAAGGATTTCAGTTAATTAAACAATTTTTAGACGCAAATTAG

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Competence-damaged protein (CinA)

(259-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.345

98.792

0.507
  cinA Streptococcus pneumoniae TIGR4

49.282

100

0.498
  cinA Streptococcus mitis SK321

49.043

100

0.495
  cinA Streptococcus mitis NCTC 12261

48.804

100

0.493
  cinA Streptococcus pneumoniae Rx1

48.565

100

0.49
  cinA Streptococcus pneumoniae R6

48.565

100

0.49
  cinA Streptococcus pneumoniae D39

48.325

100

0.488
  cinA Streptococcus mutans UA159

48.301

99.517

0.481
  cinA Streptococcus suis isolate S10

38.592

99.517

0.384