Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   OQ382_RS09680 Genome accession   NZ_CP111117
Coordinates   2025146..2026408 (-) Length   420 a.a.
NCBI ID   WP_033611918.1    Uniprot ID   -
Organism   Lactiplantibacillus paraplantarum strain RX-8     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2020146..2031408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQ382_RS09665 - 2021200..2022006 (-) 807 WP_021732543.1 TIGR00282 family metallophosphoesterase -
  OQ382_RS09670 rny 2022129..2023688 (-) 1560 WP_021732544.1 ribonuclease Y -
  OQ382_RS09675 recA 2023918..2025054 (-) 1137 WP_033611917.1 recombinase RecA Machinery gene
  OQ382_RS09680 cinA 2025146..2026408 (-) 1263 WP_033611918.1 competence/damage-inducible protein A Machinery gene
  OQ382_RS09685 pgsA 2026604..2027188 (-) 585 WP_021732547.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OQ382_RS09690 - 2027211..2028083 (-) 873 WP_033611920.1 helix-turn-helix domain-containing protein -
  OQ382_RS09695 yfmH 2028187..2029488 (-) 1302 WP_021732549.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  OQ382_RS09700 yfmF 2029485..2030750 (-) 1266 WP_033611922.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 44952.44 Da        Isoelectric Point: 7.0624

>NTDB_id=758014 OQ382_RS09680 WP_033611918.1 2025146..2026408(-) (cinA) [Lactiplantibacillus paraplantarum strain RX-8]
MQAEIIAVGTEILLGQITNTNSTYIAQGLAELGIDSYYQTVVGDNPQRLSAVIEIAAQRNELVILTGGLGPTKDDLTKQT
LAQYLNVALVESPSAMQKITAWFATNGKTMTANNRLQALYPDGAVPLTNHNGMAVGAFYQSVDSADFLLLPGPPRELTMM
FDTEAKPKLAAAYGRQAQIYSRVMRFYGISESELVTKLQPLIDGQTKVTIAPYAKTNEVTLRLSAQAVTERVAKTMIDTV
DQQIKACVGTFFYGYGDDNSLVTTVIKQMIAAKLSLTAAESLTAGLFQSTIGSVSGVSAIFPGGFVTYANEAKHQLVNVP
QAIIDTDGVVSKTTAQAMAVGAKKQLNTAVGVSFTGVAGPGTLEGQVAGTVWIGLAYRNHPVVAHQYHFAGNRQQIRERS
VMAGLDLLRHALNADMDLKK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=758014 OQ382_RS09680 WP_033611918.1 2025146..2026408(-) (cinA) [Lactiplantibacillus paraplantarum strain RX-8]
ATGCAAGCAGAAATAATCGCGGTTGGTACCGAGATTTTACTGGGACAGATTACAAATACGAATAGTACTTATATCGCACA
AGGATTGGCTGAATTAGGAATTGATAGTTATTATCAGACGGTGGTCGGTGACAATCCGCAACGGTTATCGGCCGTGATTG
AAATTGCGGCCCAACGGAATGAGCTCGTCATTTTGACGGGGGGACTAGGACCAACGAAAGATGATTTAACCAAACAGACC
CTCGCACAATATTTAAACGTGGCGTTGGTTGAGTCGCCATCAGCGATGCAAAAGATTACGGCTTGGTTTGCAACTAATGG
TAAGACAATGACTGCTAATAACCGATTACAAGCATTATATCCTGATGGTGCGGTGCCGTTGACTAATCACAATGGAATGG
CGGTTGGGGCTTTTTATCAGTCTGTGGATAGTGCTGATTTCTTGTTGCTGCCGGGACCGCCCCGCGAATTGACAATGATG
TTTGATACTGAAGCTAAGCCGAAATTGGCCGCGGCATATGGGCGACAGGCACAAATTTATTCGCGAGTGATGCGGTTTTA
TGGTATCAGTGAGTCTGAACTGGTTACTAAGTTGCAGCCATTGATTGATGGCCAGACTAAAGTGACGATCGCACCGTATG
CCAAGACTAACGAGGTGACGTTACGCCTGAGTGCCCAAGCAGTAACTGAGAGGGTAGCCAAGACGATGATTGATACGGTG
GACCAGCAAATTAAAGCTTGTGTGGGGACCTTCTTTTACGGTTATGGTGATGATAATTCGTTAGTAACAACGGTTATTAA
GCAAATGATTGCGGCTAAGTTGAGTCTTACGGCTGCGGAAAGTTTAACGGCCGGACTATTTCAGAGCACGATCGGTAGTG
TATCCGGTGTCTCAGCAATCTTTCCGGGTGGCTTTGTCACGTATGCCAATGAAGCTAAGCATCAGTTAGTCAATGTGCCG
CAAGCAATTATTGATACCGATGGGGTAGTTTCTAAAACGACTGCTCAAGCCATGGCAGTGGGAGCCAAAAAACAATTAAA
TACTGCAGTGGGCGTGAGCTTTACTGGTGTTGCGGGGCCGGGGACACTTGAAGGTCAAGTTGCTGGGACCGTCTGGATCG
GCTTAGCCTATCGCAATCACCCCGTTGTTGCTCACCAGTATCATTTTGCTGGTAACCGGCAACAGATCCGTGAGCGTAGT
GTGATGGCCGGTTTAGACTTATTGCGGCATGCTTTAAACGCAGATATGGACTTAAAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

48.113

100

0.486
  cinA Streptococcus pneumoniae TIGR4

47.991

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.991

100

0.483
  cinA Streptococcus pneumoniae R6

47.991

100

0.483
  cinA Streptococcus pneumoniae D39

47.754

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.281

100

0.476
  cinA Streptococcus mutans UA159

44.656

100

0.448
  cinA Bacillus subtilis subsp. subtilis str. 168

45.7

96.905

0.443
  cinA Streptococcus suis isolate S10

38.462

99.048

0.381