Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   PHLH3_RS27785 Genome accession   NZ_AP021905
Coordinates   6093697..6095775 (-) Length   692 a.a.
NCBI ID   WP_213626735.1    Uniprot ID   -
Organism   Pseudomonas sp. Pc102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6088697..6100775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHLH3_RS27770 (PHLH8_55120) - 6090334..6092007 (-) 1674 WP_213626732.1 AAA family ATPase -
  PHLH3_RS27775 (PHLH8_55130) aroB 6092018..6093121 (-) 1104 WP_213626734.1 3-dehydroquinate synthase -
  PHLH3_RS27780 (PHLH8_55140) aroK 6093173..6093691 (-) 519 WP_173171174.1 shikimate kinase AroK -
  PHLH3_RS27785 (PHLH8_55150) pilQ 6093697..6095775 (-) 2079 WP_213626735.1 type IV pilus secretin PilQ Machinery gene
  PHLH3_RS27790 (PHLH8_55160) pilP 6095829..6096362 (-) 534 WP_213626737.1 type 4a pilus biogenesis lipoprotein PilP -
  PHLH3_RS27795 (PHLH8_55170) pilO 6096359..6096982 (-) 624 WP_213626739.1 type 4a pilus biogenesis protein PilO -
  PHLH3_RS27800 (PHLH8_55180) pilN 6096979..6097551 (-) 573 WP_213626741.1 type 4a pilus biogenesis protein PilN -
  PHLH3_RS27805 (PHLH8_55190) pilM 6097551..6098615 (-) 1065 WP_173171164.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 74343.41 Da        Isoelectric Point: 4.8779

>NTDB_id=75763 PHLH3_RS27785 WP_213626735.1 6093697..6095775(-) (pilQ) [Pseudomonas sp. Pc102]
MNSSLSRFGLTLLAAMLSPVLLAADLQGLDVAALPGGKVELKLAFDEPVVAPRGYTIEQPARIALDLPGVTNKLGSKNRE
LGVGNARSVTIVEAKDRTRMIINLATLVPYSTRVEGNNLYVIVGEAGGATQQATRTAPVAAPVAPAAPVKTFAAAGKAIS
NIDFQRGDQGEGNVVITLSDPTVSPDIQEQGGKIRLDFAKTQLPESLRVRLDVKDFATPVQFVSAAGSSGNASITIEPTG
FYDYLAYQTDNKLTVSIKPLTQEDVEKRKSERFAYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITLRLQN
VPWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQIAELAPLRRELIQVNYAKAADIAKLFQSVTSGNE
SSDERGSITVDDRTNSIIAYQTQDKLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVNWRGARVGDNNFVIGGEG
GTRTGGGSTTPNTALGTFVDMGATNATSSIGIGFVTDNTILDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGAEIPY
QESSSSGATSTSFKEAALSLEVTPQITPDNRIIMEVKVTKDAPDFSNALNGVPPINKNEVNAKVLVSDGETIVIGGVFSN
TQTKATDKVPFLGDLPFLGRMFKRDVVQDKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=75763 PHLH3_RS27785 WP_213626735.1 6093697..6095775(-) (pilQ) [Pseudomonas sp. Pc102]
ATGAACAGCTCGCTTTCGCGCTTCGGCCTTACCCTATTGGCCGCCATGTTGTCGCCAGTATTGCTGGCTGCCGACCTGCA
GGGTCTCGATGTGGCAGCCTTGCCTGGCGGTAAGGTTGAACTGAAACTTGCCTTCGACGAGCCGGTTGTTGCGCCTCGGG
GCTATACCATCGAGCAGCCTGCACGCATTGCTCTGGACCTGCCCGGGGTAACCAACAAACTGGGCAGCAAGAATCGCGAA
CTGGGCGTGGGCAACGCGCGGAGCGTCACCATAGTCGAGGCCAAGGATCGCACACGGATGATTATCAACCTGGCGACGCT
CGTGCCCTACAGCACGCGTGTCGAGGGTAACAATCTCTACGTCATCGTCGGTGAGGCGGGCGGTGCCACCCAGCAAGCGA
CCCGTACTGCTCCTGTTGCCGCTCCGGTAGCTCCTGCAGCACCCGTCAAGACTTTTGCTGCGGCAGGCAAGGCCATCAGC
AATATTGATTTTCAGCGCGGTGACCAGGGTGAAGGCAATGTTGTAATCACGCTTTCCGATCCCACCGTAAGCCCGGATAT
TCAGGAACAGGGTGGCAAGATTCGCCTTGATTTCGCCAAGACCCAACTGCCCGAGTCGTTGCGCGTGCGCCTGGATGTGA
AGGATTTCGCTACGCCGGTTCAGTTCGTCAGCGCAGCGGGCTCTTCAGGTAACGCCAGCATCACCATCGAGCCGACCGGC
TTCTACGATTACCTGGCCTATCAAACTGATAACAAGTTGACTGTCAGCATCAAGCCGCTGACGCAAGAAGATGTCGAGAA
GCGCAAGTCCGAGCGTTTTGCCTACTCGGGTGAAAAGCTCTCTTTGAACTTCCAGGACATCGATGTGCGTTCGGTGCTCC
AGCTGATTGCTGACTTCACCGACCTCAACCTGGTGGCCTCGGATACCGTTCAGGGCAATATCACGCTGCGCCTGCAGAAC
GTGCCCTGGGACCAGGCGTTGGACCTGGTGCTGAAAACCAAGGGGCTCGACAAGCGCAAGGTTGGCAACGTGCTGCTGGT
TGCACCGGCTGACGAAATTGCTGCTCGTGAGCGTCAAGAGCTGGAGTCCCAGAAGCAGATCGCCGAGTTGGCTCCGCTGC
GTCGTGAGCTGATCCAGGTGAACTACGCCAAGGCTGCCGATATCGCCAAGCTGTTCCAGTCCGTGACCAGTGGCAACGAG
TCGTCGGATGAGCGTGGTTCGATTACCGTGGATGACCGCACCAACAGCATCATCGCCTACCAGACCCAGGACAAGCTGGA
CGAACTGCGCCGCATCGTGGCCCAGCTCGATATCCCGGTCCGCCAGGTGATGATCGAGGCTCGTATCGTCGAGGCGAACG
TCGACTACGACAAATCGCTGGGTGTGAACTGGCGCGGTGCGCGCGTGGGTGACAACAACTTCGTCATCGGCGGGGAAGGT
GGCACCCGGACCGGTGGCGGTAGCACCACTCCCAATACTGCTCTCGGAACCTTCGTGGACATGGGGGCGACTAACGCTAC
TTCCTCCATCGGTATCGGCTTCGTAACCGACAACACGATCCTCGACCTCGAACTTTCCGCCATGGAGAAGACCGGCAACG
GGGAGATCGTGTCGCAGCCGAAGGTTGTTACCTCGGACAAGGAAACCGCGAAGATTCTCAAAGGCGCAGAGATTCCTTAC
CAAGAGTCCAGCTCCAGCGGCGCTACCAGCACGTCCTTCAAAGAAGCGGCCCTGTCCCTGGAAGTGACTCCGCAGATCAC
GCCTGACAACCGCATCATCATGGAAGTCAAGGTTACCAAGGATGCCCCGGACTTCTCCAACGCGCTGAACGGCGTGCCGC
CGATCAACAAGAACGAGGTCAATGCCAAGGTTCTGGTCAGCGATGGCGAGACCATCGTGATCGGTGGTGTGTTCTCCAAC
ACCCAGACCAAGGCGACTGACAAGGTTCCCTTCCTTGGCGACCTGCCGTTCCTCGGCCGCATGTTCAAGCGTGATGTGGT
CCAGGACAAGAAATCCGAGCTGCTGGTCTTCCTCACCCCGCGTATCATGAACAACCAGGCTATTGCGGTGAGTCGCTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(377-442)

AMIN domain (AMIN)

(40-121)

Secretin and TonB N terminus short domain (STN)

(303-349)

Bacterial type II and III secretion system protein (Secretin)

(527-683)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

77.762

100

0.803
  comQ Acinetobacter baylyi ADP1

43.294

99.133

0.429
  pilQ Acinetobacter baumannii strain A118

40.027

100

0.426
  pilQ Acinetobacter baumannii D1279779

40.027

100

0.426
  pilQ Legionella pneumophila strain ERS1305867

38.209

96.821

0.37
  pilQ Legionella pneumophila strain Lp02

38.209

96.821

0.37

Multiple sequence alignment