Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OQ460_RS21600 Genome accession   NZ_CP110853
Coordinates   4752355..4753563 (+) Length   402 a.a.
NCBI ID   WP_410019220.1    Uniprot ID   -
Organism   Pseudomonas sp. 16FHM2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4747355..4758563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQ460_RS21575 (OQ460_21510) nadC 4748724..4749572 (+) 849 WP_410019216.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OQ460_RS21580 (OQ460_21515) - 4749640..4749945 (-) 306 WP_410019217.1 DUF6388 family protein -
  OQ460_RS21590 (OQ460_21525) - 4750195..4751610 (-) 1416 WP_410019218.1 O-antigen ligase family protein -
  OQ460_RS21595 (OQ460_21530) - 4751692..4752105 (-) 414 WP_410019219.1 pilin -
  OQ460_RS21600 (OQ460_21535) pilC 4752355..4753563 (+) 1209 WP_410019220.1 type II secretion system F family protein Machinery gene
  OQ460_RS21605 (OQ460_21540) pilD 4753572..4754438 (+) 867 WP_410022071.1 prepilin peptidase Machinery gene
  OQ460_RS21610 (OQ460_21545) coaE 4754435..4755058 (+) 624 WP_410019221.1 dephospho-CoA kinase -
  OQ460_RS21615 (OQ460_21550) yacG 4755055..4755255 (+) 201 WP_410019222.1 DNA gyrase inhibitor YacG -
  OQ460_RS21620 (OQ460_21555) - 4755252..4755467 (-) 216 WP_084376378.1 hypothetical protein -
  OQ460_RS21625 (OQ460_21560) - 4755531..4756220 (-) 690 WP_410022072.1 energy-coupling factor ABC transporter permease -
  OQ460_RS21630 (OQ460_21565) - 4756426..4757055 (+) 630 WP_410019223.1 DUF1780 domain-containing protein -
  OQ460_RS21635 (OQ460_21570) - 4757233..4757406 (+) 174 WP_410019224.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43561.08 Da        Isoelectric Point: 10.1477

>NTDB_id=756659 OQ460_RS21600 WP_410019220.1 4752355..4753563(+) (pilC) [Pseudomonas sp. 16FHM2]
MNNAPTTYAWEGTLHNGRKVSGETRGHNPALIKAQLRRQGINPSRVRVKSAVLSSLRSPVSPTEITLFTRQLATLSKAGI
PMLQAFDIIGDGFDNRHMRSLLQELKQDIAAGSSLSLALLKKPHYFDTLYCNLIAAGELAGALEILLERVATHLEKSQRL
KARIRKAMTYPLVVLIVATLVSSILLIHVVPQFRGLFAGIDTPLPGFTLTVIALSEFLQHSWWMLLMALCASVLGLRHGY
RHSSGFRLWLDTGLLKVPLAGTLLKKSAVARYARTLSTTFSAGVPLAQALDSVAGATGNGLFKQAINRMRQDVATGMQLN
TSMAASGLFPGMAIQMTVIGEESGTLDSMLEKVASHYEADVDNLVDNLTSLMEPLIMLVLGSIVGALVIAMYLPIFQLGT
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=756659 OQ460_RS21600 WP_410019220.1 4752355..4753563(+) (pilC) [Pseudomonas sp. 16FHM2]
ATGAACAACGCGCCAACCACCTATGCTTGGGAAGGCACCCTTCACAATGGCCGTAAAGTATCCGGCGAAACCCGCGGCCA
CAACCCCGCGCTGATCAAGGCACAACTACGCCGCCAAGGCATCAATCCGAGCCGGGTTCGCGTAAAATCCGCCGTACTTT
CAAGCCTGAGAAGCCCTGTAAGCCCCACCGAAATCACGCTCTTCACTCGGCAACTGGCGACACTTTCAAAAGCCGGTATT
CCCATGCTGCAAGCGTTCGATATCATCGGCGACGGTTTCGACAACCGGCACATGCGCTCATTGCTGCAGGAGTTGAAGCA
AGACATCGCTGCCGGCAGCAGCCTGTCGCTGGCGCTGCTGAAAAAGCCACATTACTTCGATACGCTGTATTGCAACCTGA
TCGCGGCCGGCGAGCTGGCCGGAGCCCTGGAAATCCTGCTGGAACGCGTCGCGACCCATTTGGAAAAGAGCCAACGACTC
AAGGCCAGGATCAGGAAAGCCATGACGTATCCGCTGGTGGTATTGATCGTAGCCACGCTCGTCAGCAGCATTTTGCTGAT
TCACGTAGTGCCGCAGTTCCGAGGGCTGTTTGCCGGGATCGACACGCCACTGCCGGGCTTCACCTTGACGGTTATCGCGC
TGTCGGAGTTTCTCCAGCACAGCTGGTGGATGCTGCTCATGGCCTTGTGTGCCAGTGTTTTGGGGCTGCGCCACGGCTAT
CGTCACTCATCTGGATTTCGCCTGTGGCTGGATACCGGTTTGTTGAAAGTACCGCTGGCAGGCACACTGCTGAAAAAGTC
AGCCGTTGCCCGGTACGCGCGCACGCTCTCGACTACTTTTTCGGCCGGAGTACCGCTGGCACAAGCACTGGATTCGGTGG
CAGGAGCCACCGGTAACGGGTTATTCAAACAGGCAATCAACCGTATGCGCCAGGATGTGGCCACAGGGATGCAATTGAAC
ACAAGCATGGCCGCCAGCGGGCTGTTTCCCGGCATGGCAATTCAAATGACTGTCATCGGTGAAGAGTCCGGCACCCTGGA
CAGCATGCTGGAAAAGGTCGCCAGTCACTACGAAGCGGACGTGGATAATCTGGTGGACAACCTGACCAGCCTCATGGAAC
CGCTGATCATGCTGGTGCTTGGCAGCATTGTCGGGGCACTGGTGATCGCCATGTACCTGCCGATCTTCCAGCTCGGCACG
GCGTTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.722

98.259

0.567
  pilC Acinetobacter baylyi ADP1

48.99

98.507

0.483
  pilC Acinetobacter baumannii D1279779

48.99

98.507

0.483
  pilC Legionella pneumophila strain ERS1305867

46.402

100

0.465
  pilC Vibrio cholerae strain A1552

40.967

97.761

0.4
  pilG Neisseria gonorrhoeae MS11

40.506

98.259

0.398
  pilG Neisseria meningitidis 44/76-A

40.838

95.025

0.388
  pilC Vibrio campbellii strain DS40M4

38.01

97.512

0.371