Detailed information NTG0756660

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OQ460_RS21605
• Genome accession: NZ_CP110853
• Coordinates: 4753572..4754438 (+)
• Length: 288 a.a.
• NCBI ID: WP_410022071.1
• Uniprot ID: -
• Organism: Pseudomonas sp. 16FHM2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4748572..4759438

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OQ460_RS21575 (OQ460_21510)	nadC	4748724..4749572 (+)	849	WP_410019216.1	carboxylating nicotinate-nucleotide diphosphorylase	-
OQ460_RS21580 (OQ460_21515)	-	4749640..4749945 (-)	306	WP_410019217.1	DUF6388 family protein	-
OQ460_RS21590 (OQ460_21525)	-	4750195..4751610 (-)	1416	WP_410019218.1	O-antigen ligase family protein	-
OQ460_RS21595 (OQ460_21530)	-	4751692..4752105 (-)	414	WP_410019219.1	pilin	-
OQ460_RS21600 (OQ460_21535)	pilC	4752355..4753563 (+)	1209	WP_410019220.1	type II secretion system F family protein	Machinery gene
OQ460_RS21605 (OQ460_21540)	pilD	4753572..4754438 (+)	867	WP_410022071.1	prepilin peptidase	Machinery gene
OQ460_RS21610 (OQ460_21545)	coaE	4754435..4755058 (+)	624	WP_410019221.1	dephospho-CoA kinase	-
OQ460_RS21615 (OQ460_21550)	yacG	4755055..4755255 (+)	201	WP_410019222.1	DNA gyrase inhibitor YacG	-
OQ460_RS21620 (OQ460_21555)	-	4755252..4755467 (-)	216	WP_084376378.1	hypothetical protein	-
OQ460_RS21625 (OQ460_21560)	-	4755531..4756220 (-)	690	WP_410022072.1	energy-coupling factor ABC transporter permease	-
OQ460_RS21630 (OQ460_21565)	-	4756426..4757055 (+)	630	WP_410019223.1	DUF1780 domain-containing protein	-
OQ460_RS21635 (OQ460_21570)	-	4757233..4757406 (+)	174	WP_410019224.1	DUF3094 family protein	-
OQ460_RS21640 (OQ460_21575)	-	4757467..4758765 (+)	1299	WP_410019225.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31613.48 Da
• Isoelectric Point: 8.3534

>NTDB_id=756660 OQ460_RS21605 WP_410022071.1 4753572..4754438(+) (pilD) [Pseudomonas sp. 16FHM2]
MSQLLTQQPWVFIWSALVLGLIVGSFLNVLAWRLPIILERDWRAQARDILGLEHEPVGATYNLMHPGSRCPHCAQPIRPW
ENIPLLSYLLLKGRCAHCKASISARYPLTELACALVSAFVAWHFGFGWAAGAVLLLSWGLLAMSLIDADHQLLPDVLVLP
LLWLGLILNSFGLFTSLSDALWGVIAGYLSLWSVFWVFKLVTGKDGMGQGDFKLLAMLGAWGGWQILPMTLLLASLAGTI
SGLILMRLRGTQTSAPLAFGPYLATAGWIALLWGGQITNFYLQSAGFR

Nucleotide

• Length: 867 bp

>NTDB_id=756660 OQ460_RS21605 WP_410022071.1 4753572..4754438(+) (pilD) [Pseudomonas sp. 16FHM2]
CTGAGCCAACTACTGACCCAGCAGCCTTGGGTATTCATATGGAGCGCGCTGGTGCTCGGCTTGATCGTCGGCAGCTTTCT
CAATGTGTTGGCATGGCGCCTGCCAATAATCCTGGAACGGGATTGGCGCGCCCAGGCCCGCGACATCCTCGGGCTTGAGC
ACGAACCGGTCGGCGCAACCTACAACCTGATGCACCCTGGCTCCCGCTGCCCACACTGTGCCCAGCCGATTCGTCCCTGG
GAAAACATCCCGCTGCTCAGTTACCTGCTGCTTAAAGGTCGCTGTGCGCACTGCAAAGCCTCCATCAGTGCGCGCTACCC
CCTCACCGAGTTGGCATGCGCGCTTGTCTCGGCTTTCGTTGCCTGGCATTTCGGCTTTGGCTGGGCGGCGGGCGCCGTGT
TGCTGCTGAGCTGGGGATTGCTGGCCATGAGCCTGATCGATGCCGATCATCAACTGTTGCCCGACGTGCTGGTCTTGCCG
CTGCTTTGGCTCGGGCTGATCCTCAATTCCTTTGGCCTGTTCACTTCTCTGTCCGACGCACTTTGGGGTGTCATTGCCGG
CTACCTGAGCCTGTGGTCGGTATTCTGGGTATTCAAACTGGTCACCGGAAAGGACGGGATGGGCCAAGGGGACTTCAAGC
TGCTGGCCATGCTCGGCGCCTGGGGGGGCTGGCAAATCCTGCCGATGACACTGTTGCTCGCTTCGCTGGCCGGCACCATA
TCGGGGTTGATACTGATGCGCCTGCGCGGCACCCAGACATCAGCGCCCCTGGCTTTCGGGCCTTATCTGGCCACTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCAACTTCTATTTGCAGTCCGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (135-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.873	98.611	0.531
pilD	Vibrio campbellii strain DS40M4	50.352	98.611	0.497
pilD	Acinetobacter nosocomialis M2	48.718	94.792	0.462
pilD	Acinetobacter baumannii D1279779	48.352	94.792	0.458
pilD	Neisseria gonorrhoeae MS11	47.037	93.75	0.441