Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BV903_RS05390 Genome accession   NZ_CP110813
Coordinates   1271311..1272579 (-) Length   422 a.a.
NCBI ID   WP_078998160.1    Uniprot ID   -
Organism   Lysobacter enzymogenes strain B25     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1266311..1277579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV903_RS05375 (BV903_005375) - 1268656..1269573 (+) 918 WP_241833776.1 Nudix family hydrolase -
  BV903_RS05380 (BV903_005380) coaE 1269785..1270399 (-) 615 WP_078998161.1 dephospho-CoA kinase -
  BV903_RS05385 (BV903_005385) - 1270404..1271291 (-) 888 WP_057948799.1 A24 family peptidase -
  BV903_RS05390 (BV903_005390) pilC 1271311..1272579 (-) 1269 WP_078998160.1 type II secretion system F family protein Machinery gene
  BV903_RS05395 (BV903_005395) pilB 1272583..1274310 (-) 1728 WP_078998159.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BV903_RS05400 (BV903_005400) - 1274388..1276013 (-) 1626 WP_267272052.1 phosphoethanolamine transferase -
  BV903_RS05405 (BV903_005405) - 1276152..1276592 (-) 441 WP_078998157.1 pilin -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45992.46 Da        Isoelectric Point: 10.3218

>NTDB_id=756405 BV903_RS05390 WP_078998160.1 1271311..1272579(-) (pilC) [Lysobacter enzymogenes strain B25]
MSATRSATRAASKTAPQVRRENPLALFVWQGTDKRGIKMKGEQAAKNANLLRAELRRQGITPTVVKPKAKPLFGASGKRI
TATDIAIFSRQIATMLKSGVPIVTSLEIIGEGHKNPRMKTLLNAVRSDLESGLSLYEAMSRHPVQFDELYRNLVKAGESA
GVLETVLDTVATYKENIETLKGKIKKALYYPATVIAVAILVSAILLVFVVPQFKATFQSFGADLPAFTLMVIGMSEFMIQ
WWWAVLLLVVGAGVAFVMAKNRSLAFSHFIDRMMLKLPIVGQILHNAAIARFARTLAVSFRAGVPLVEALDTVAGATGNV
VYEKAVLRIRDDVSVGYQVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMIIL
GVIVGGMVIAMYLPIFKLAATI

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=756405 BV903_RS05390 WP_078998160.1 1271311..1272579(-) (pilC) [Lysobacter enzymogenes strain B25]
ATGTCCGCGACCCGTTCCGCCACTCGCGCCGCCAGCAAGACCGCCCCCCAGGTCCGCCGCGAAAATCCCCTGGCCCTGTT
CGTCTGGCAGGGCACCGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGGCGGCCAAGAACGCCAACCTGCTGCGCGCCG
AGCTGCGCCGCCAGGGCATCACCCCGACCGTGGTCAAGCCCAAGGCCAAGCCGCTGTTCGGCGCCTCCGGCAAGCGCATC
ACCGCGACCGACATCGCCATCTTCAGCCGCCAGATCGCGACCATGCTGAAGTCCGGCGTGCCGATCGTGACCTCGCTGGA
GATCATCGGCGAGGGCCACAAGAACCCGCGCATGAAGACCCTGCTCAACGCCGTGCGCTCCGATCTGGAAAGCGGCTTGT
CGCTGTACGAGGCGATGTCCCGGCATCCGGTGCAGTTCGACGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAATCGGCG
GGCGTGCTCGAAACCGTGCTGGACACGGTGGCCACGTACAAGGAAAACATCGAAACCCTCAAGGGCAAGATCAAGAAAGC
CTTGTACTACCCGGCCACGGTCATCGCGGTGGCGATCCTGGTCAGCGCGATCCTGCTGGTGTTCGTGGTGCCGCAGTTCA
AGGCGACGTTCCAGAGCTTCGGCGCGGATCTGCCGGCCTTCACCTTGATGGTGATCGGCATGAGCGAATTCATGATCCAG
TGGTGGTGGGCCGTCCTACTGCTGGTGGTCGGCGCCGGCGTCGCCTTCGTCATGGCCAAGAACCGCTCGCTGGCGTTCTC
CCACTTCATCGACCGGATGATGCTCAAGCTGCCGATCGTGGGCCAGATCCTGCACAACGCGGCCATCGCCCGCTTCGCCC
GCACCCTGGCCGTCAGCTTCCGCGCCGGCGTGCCGCTGGTGGAAGCGCTCGATACCGTCGCCGGCGCGACCGGCAACGTC
GTCTACGAGAAGGCCGTGCTGCGCATCCGCGACGACGTCTCGGTCGGCTACCAGGTCAACATGGCGATGAAGCAGGTCAA
CCTCTTCCCGCACATGGTGATCCAGATGACCGCGATCGGCGAAGAGGCCGGTGCGCTCGACACCATGCTGGTCAAGGTCG
CGGAGTTCTACGAGCAGGAGGTCAACAACGCCGTCGACGCGCTGTCGAGCCTGCTCGAACCGCTGATCATGATCATCCTG
GGCGTCATCGTCGGCGGCATGGTCATCGCGATGTATCTGCCGATCTTCAAGCTGGCCGCCACGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(292-414)

Type II secretion system (T2SS), protein F (T2SSF)

(88-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

55.693

95.735

0.533
  pilC Pseudomonas stutzeri DSM 10701

54.523

94.313

0.514
  pilC Acinetobacter baylyi ADP1

52.709

96.209

0.507
  pilC Acinetobacter baumannii D1279779

51.478

96.209

0.495
  pilG Neisseria gonorrhoeae MS11

43.25

94.787

0.41
  pilG Neisseria meningitidis 44/76-A

43.25

94.787

0.41
  pilC Vibrio campbellii strain DS40M4

41.667

96.682

0.403
  pilC Vibrio cholerae strain A1552

40.796

95.261

0.389
  pilC Thermus thermophilus HB27

36.085

100

0.363