Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OPR71_RS15520 Genome accession   NZ_CP110670
Coordinates   3382164..3383273 (-) Length   369 a.a.
NCBI ID   WP_206954676.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain AUSMDU00064140     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3377164..3388273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPR71_RS15490 (OPR71_15490) hemF 3377624..3378541 (-) 918 WP_065274969.1 oxygen-dependent coproporphyrinogen oxidase -
  OPR71_RS15495 (OPR71_15495) - 3378589..3379146 (-) 558 WP_005379084.1 L-threonylcarbamoyladenylate synthase -
  OPR71_RS15500 (OPR71_15500) purE 3379346..3379831 (+) 486 WP_005379082.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OPR71_RS15505 (OPR71_15505) - 3379836..3380969 (+) 1134 WP_206954678.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OPR71_RS15510 (OPR71_15510) - 3381036..3381605 (-) 570 WP_206954677.1 type I DNA topoisomerase -
  OPR71_RS15515 (OPR71_15515) - 3381682..3382161 (-) 480 WP_005379074.1 DUF494 family protein -
  OPR71_RS15520 (OPR71_15520) dprA 3382164..3383273 (-) 1110 WP_206954676.1 DNA-processing protein DprA Machinery gene
  OPR71_RS15525 (OPR71_15525) - 3383257..3384351 (-) 1095 WP_042523883.1 LysM peptidoglycan-binding domain-containing protein -
  OPR71_RS15530 (OPR71_15530) def 3384490..3385008 (+) 519 WP_005379068.1 peptide deformylase -
  OPR71_RS15535 (OPR71_15535) fmt 3385042..3385989 (+) 948 WP_017635609.1 methionyl-tRNA formyltransferase -
  OPR71_RS15540 (OPR71_15540) rsmB 3386070..3387353 (+) 1284 WP_206954675.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39968.71 Da        Isoelectric Point: 7.0019

>NTDB_id=755926 OPR71_RS15520 WP_206954676.1 3382164..3383273(-) (dprA) [Vibrio alginolyticus strain AUSMDU00064140]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWLEASTNHH
ILTLTDPCYPPQLKQIVAPPPLLFVQGNPTCLSQPQIAMVGSRNASFDGLQHARQFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLANIYPARHRGLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAKKSGSL
ITARYALEQGREVFALPASINAPNACGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=755926 OPR71_RS15520 WP_206954676.1 3382164..3383273(-) (dprA) [Vibrio alginolyticus strain AUSMDU00064140]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGCGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCACGTAACATCGTAAACTTCTCTCCTGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTCGATGCTTGTTTAAGCTGGCTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGTGTTATCCACCTCAGCTCAAACAAATCGTTGCACCGCCACCTCTACTTTTTGTTCAAGG
AAACCCTACTTGTCTTTCTCAGCCACAAATCGCGATGGTTGGCAGTCGAAATGCGAGTTTTGATGGATTACAGCATGCAC
GTCAGTTTGCTGCAGAGTTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGTCATGCGCAT
GACGGTGCGTTGCAAGCGGGTGGTAAGACGATTGCGGTGCTAGGATCTGGCTTAGCAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAACATGGGGCTTTGGTGTCTGAGTTTCGGCCTAATGCCAAGCCGCGCCCAGAAAACT
TCCCGCGTCGTAATCGTATTATTAGTGGATTATCGCTTGGTGTACTGGTCGTCGAGGCGGCGAAAAAGAGCGGCTCGTTA
ATTACAGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCTCTGCCAGCGTCAATCAATGCCCCCAATGCCTGCGG
TGGAAACCAGTTGATACGTCATGGCGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCCTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.198

100

0.832
  dprA Vibrio cholerae strain A1552

57.297

100

0.575
  dprA Glaesserella parasuis strain SC1401

46.505

100

0.469
  dprA Legionella pneumophila strain ERS1305867

44.875

97.832

0.439
  dprA Haemophilus influenzae Rd KW20

44.957

94.038

0.423
  dprA Neisseria meningitidis strain C311

37.121

100

0.398
  dprA Neisseria meningitidis MC58

37.121

100

0.398
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.379