Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   OOT55_RS11845 Genome accession   NZ_CP110629
Coordinates   2730350..2731495 (-) Length   381 a.a.
NCBI ID   WP_265366078.1    Uniprot ID   -
Organism   Marinimicrobium sp. C6131     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2725350..2736495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOT55_RS11810 (OOT55_11810) - 2725524..2726066 (-) 543 WP_265366073.1 chemotaxis protein CheW -
  OOT55_RS11815 (OOT55_11815) pilH 2726102..2726464 (-) 363 WP_024461426.1 twitching motility response regulator PilH -
  OOT55_RS11820 (OOT55_11820) pilG 2726577..2726972 (-) 396 WP_024461427.1 twitching motility response regulator PilG Regulator
  OOT55_RS11825 (OOT55_11825) gshB 2727378..2728325 (+) 948 WP_265366074.1 glutathione synthase -
  OOT55_RS11830 (OOT55_11830) - 2728361..2729266 (+) 906 WP_265366075.1 energy transducer TonB -
  OOT55_RS11835 (OOT55_11835) - 2729324..2729917 (+) 594 WP_265366076.1 YqgE/AlgH family protein -
  OOT55_RS11840 (OOT55_11840) ruvX 2729919..2730323 (+) 405 WP_265366077.1 Holliday junction resolvase RuvX -
  OOT55_RS11845 (OOT55_11845) pilU 2730350..2731495 (-) 1146 WP_265366078.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  OOT55_RS11850 (OOT55_11850) pilT 2731515..2732549 (-) 1035 WP_024461433.1 type IV pilus twitching motility protein PilT Machinery gene
  OOT55_RS11855 (OOT55_11855) - 2732645..2733337 (+) 693 WP_265366079.1 YggS family pyridoxal phosphate-dependent enzyme -
  OOT55_RS11860 (OOT55_11860) proC 2733354..2734181 (+) 828 WP_265366080.1 pyrroline-5-carboxylate reductase -
  OOT55_RS11865 (OOT55_11865) - 2734223..2734813 (+) 591 WP_265366081.1 YggT family protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 42219.26 Da        Isoelectric Point: 5.6251

>NTDB_id=755456 OOT55_RS11845 WP_265366078.1 2730350..2731495(-) (pilU) [Marinimicrobium sp. C6131]
MDFDRLLSLMVEKGASDLFITAGVPPSIKVNGKLVPATASPLAPEKAREVVLGVMNEKQRREFLEQKELNFAISARGIGR
FRASAFYQRNLAGMVLRRIETTIPEIDDLGLPDIIKDLAMTKRGLILFVGATGTGKSTSLASMIGHRNRNSKGHIISIED
PIEFIHQHQGCIITQREVGIDTESFETALKNTLRQAPDVILIGEVRTRETMEHAIAFAETGHLCLATLHANNANQALDRI
IHFFPADRHRQLWMDLSLNLRGIVAQQLIPTPDGQGRRACLEVLLNTPLASDLIRKGEVSELKELMKKSTELGMQTFDQA
LYELYDAGEITYEDALAHADSPNDLRLLIKLGSETDATYLSHAADELSIENDGSDDRGRVF

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=755456 OOT55_RS11845 WP_265366078.1 2730350..2731495(-) (pilU) [Marinimicrobium sp. C6131]
ATGGATTTTGATCGTTTATTGTCGCTGATGGTCGAGAAAGGGGCCTCAGATCTTTTCATTACCGCCGGCGTACCGCCGTC
CATCAAGGTGAACGGCAAGCTGGTTCCCGCCACCGCTTCGCCGCTGGCTCCGGAGAAGGCCCGGGAGGTGGTGCTGGGGG
TCATGAATGAAAAGCAGCGCCGGGAATTTCTCGAGCAGAAAGAGCTCAACTTCGCCATCAGCGCCCGCGGTATAGGCCGC
TTCCGGGCGAGCGCGTTCTACCAGCGCAACCTGGCGGGCATGGTGTTGCGCCGTATTGAGACCACCATTCCGGAAATCGA
TGATCTGGGCCTGCCGGACATCATCAAGGATCTGGCCATGACCAAACGGGGGCTGATCCTGTTTGTGGGGGCAACCGGCA
CCGGTAAGTCAACGTCGCTCGCCTCGATGATCGGCCACCGCAATCGCAACAGCAAGGGCCATATCATTTCCATCGAAGAC
CCGATTGAATTCATTCATCAGCATCAGGGCTGCATCATCACCCAGCGGGAAGTGGGCATTGATACCGAGTCGTTTGAGAC
CGCGCTGAAGAACACTCTGCGTCAGGCGCCGGACGTGATCCTGATTGGTGAGGTCCGTACCCGGGAAACCATGGAGCACG
CGATTGCGTTTGCCGAAACCGGTCACCTGTGTCTGGCGACCCTGCACGCCAACAATGCCAACCAGGCGTTGGACCGGATC
ATTCACTTTTTCCCGGCGGACCGGCATCGCCAGTTGTGGATGGACCTGTCCCTGAATCTGCGGGGTATCGTGGCCCAGCA
ACTGATCCCGACGCCGGACGGTCAGGGCCGTCGGGCCTGTCTTGAGGTGCTGCTGAATACGCCGCTGGCGTCGGATCTGA
TTCGCAAAGGGGAGGTCAGTGAGCTCAAGGAGCTGATGAAAAAGTCCACCGAACTGGGCATGCAGACCTTCGATCAGGCG
TTGTACGAGCTGTACGATGCCGGGGAGATCACCTACGAGGACGCTCTGGCTCACGCCGATTCACCCAATGATCTGCGCTT
GTTGATCAAGCTCGGCTCGGAAACGGATGCCACTTATCTGTCTCATGCGGCCGATGAGCTGTCGATCGAAAACGACGGCT
CCGATGATCGGGGGCGGGTGTTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(64-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

78.478

100

0.785
  pilU Acinetobacter baylyi ADP1

67.227

93.701

0.63
  pilU Vibrio cholerae strain A1552

55.429

91.864

0.509
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.348

90.551

0.402
  pilT Legionella pneumophila strain Lp02

41.493

87.927

0.365
  pilT Legionella pneumophila strain ERS1305867

41.493

87.927

0.365